Variant report

Variant	rs7164550
Chromosome Location	chr15:52102764-52102765
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52100222..52103696-chr15:52103888..52107125,3	MCF-7	breast:
2	chr15:52099817..52103659-chr15:52120631..52123209,5	MCF-7	breast:
3	chr15:52100848..52103641-chr15:52104210..52107534,4	K562	blood:
4	chr15:52098121..52099949-chr15:52102548..52104205,2	K562	blood:
5	chr15:52100912..52103641-chr15:52104317..52106256,2	K562	blood:

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16964486	1.00[MEX][hapmap]
rs7168503	1.00[AMR][1000 genomes]
rs7168775	1.00[AMR][1000 genomes]
rs8035223	1.00[AMR][1000 genomes]
rs8038895	1.00[AMR][1000 genomes]
rs8039052	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv3361968	chr15:52087428-52107237	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52052600-52106600	Weak transcription	HSMM	muscle
2	chr15:52060200-52103400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:52060800-52105400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:52061600-52112000	Weak transcription	NHLF	lung
5	chr15:52074800-52102800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:52076800-52104400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:52085800-52105200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:52085800-52108800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:52089000-52106400	Weak transcription	HSMMtube	muscle
10	chr15:52089200-52107200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr15:52090400-52104400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr15:52091200-52104600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:52091200-52109400	Weak transcription	Gastric	stomach
14	chr15:52091400-52103600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr15:52091800-52108200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr15:52092000-52107800	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:52093600-52105200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:52093800-52108600	Weak transcription	Fetal Lung	lung
19	chr15:52096000-52104800	Weak transcription	Placenta	Placenta
20	chr15:52097200-52103000	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr15:52098400-52104000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:52098400-52104400	Strong transcription	Brain Anterior Caudate	brain
23	chr15:52098400-52104400	Strong transcription	Brain Cingulate Gyrus	brain
24	chr15:52098400-52106800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:52098800-52108800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr15:52099000-52103000	Strong transcription	Colon Smooth Muscle	Colon
27	chr15:52099200-52107400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr15:52099200-52108800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:52099400-52107200	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr15:52099600-52108600	Weak transcription	Primary B cells from peripheral blood	blood
31	chr15:52099600-52108800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr15:52099800-52103600	Weak transcription	Ovary	ovary
33	chr15:52099800-52108400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr15:52099800-52109000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr15:52099800-52109400	Weak transcription	Spleen	Spleen
36	chr15:52099800-52110000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:52099800-52110400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:52099800-52110400	Weak transcription	Left Ventricle	heart
39	chr15:52099800-52113800	Weak transcription	Aorta	Aorta
40	chr15:52100000-52103600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:52100000-52103600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr15:52100000-52104400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr15:52100000-52106200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr15:52100000-52109400	Weak transcription	Esophagus	oesophagus
45	chr15:52100000-52109400	Weak transcription	Fetal Stomach	stomach
46	chr15:52100000-52109400	Weak transcription	Lung	lung
47	chr15:52100000-52110200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:52100000-52113200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr15:52100200-52103600	Weak transcription	Fetal Brain Male	brain
50	chr15:52100200-52104800	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links