Variant report

Variant	rs7168775
Chromosome Location	chr15:52017101-52017102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52010154..52013648-chr15:52016687..52020314,4	MCF-7	breast:
2	chr15:52015204..52021746-chr15:52024939..52031385,17	MCF-7	breast:
3	chr15:52013040..52016397-chr15:52016962..52020800,6	K562	blood:
4	chr15:52016515..52018648-chr15:52040542..52043046,2	MCF-7	breast:
5	chr15:52015670..52018450-chr15:52021031..52024231,3	K562	blood:

Variant related genes	Relation type
ENSG00000140280	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16964486	1.00[YRI][hapmap]
rs17705373	1.00[YRI][hapmap]
rs17705685	1.00[YRI][hapmap]
rs3751595	1.00[YRI][hapmap]
rs3794533	1.00[YRI][hapmap]
rs7164550	1.00[AMR][1000 genomes]
rs7165594	1.00[YRI][hapmap]
rs7167759	1.00[YRI][hapmap]
rs7168503	1.00[AMR][1000 genomes]
rs8034090	1.00[YRI][hapmap]
rs8035223	1.00[AMR][1000 genomes]
rs8038895	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8039052	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51974200-52018800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:51975600-52017200	Weak transcription	Fetal Brain Male	brain
3	chr15:51984800-52018600	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:51991400-52018800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:51992200-52018800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:51999800-52018200	Weak transcription	Fetal Stomach	stomach
7	chr15:52000800-52024000	Weak transcription	Gastric	stomach
8	chr15:52001000-52018600	Weak transcription	Pancreas	Pancrea
9	chr15:52004800-52018600	Weak transcription	Spleen	Spleen
10	chr15:52006400-52018400	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:52007000-52023400	Weak transcription	Brain Anterior Caudate	brain
12	chr15:52007800-52018200	Weak transcription	NHDF-Ad	bronchial
13	chr15:52008200-52023200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:52008400-52018400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:52008400-52023400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:52010800-52018400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:52010800-52018400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr15:52011200-52018400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:52011200-52018600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:52011400-52018800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr15:52011400-52023400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr15:52011600-52018400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:52011600-52023400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:52011800-52018200	Weak transcription	Hela-S3	cervix
25	chr15:52011800-52018200	Weak transcription	HMEC	breast
26	chr15:52012400-52017200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr15:52012400-52024200	Weak transcription	Fetal Lung	lung
28	chr15:52012800-52017200	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr15:52012800-52017200	Strong transcription	Primary B cells from peripheral blood	blood
30	chr15:52012800-52018400	Weak transcription	Ovary	ovary
31	chr15:52013000-52017200	Strong transcription	Dnd41	blood
32	chr15:52013400-52018600	Weak transcription	Lung	lung
33	chr15:52013400-52018800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:52013400-52023600	Weak transcription	Colonic Mucosa	Colon
35	chr15:52013600-52018400	Weak transcription	Esophagus	oesophagus
36	chr15:52013600-52018400	Weak transcription	Left Ventricle	heart
37	chr15:52013600-52018800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:52013600-52019400	Weak transcription	Thymus	Thymus
39	chr15:52013600-52028200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:52013600-52028400	Weak transcription	Fetal Brain Female	brain
41	chr15:52013600-52028800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr15:52014000-52018200	Weak transcription	Brain Substantia Nigra	brain
43	chr15:52014000-52018200	Weak transcription	Osteobl	bone
44	chr15:52014000-52018400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr15:52014000-52018400	Weak transcription	NH-A	brain
46	chr15:52014000-52019200	Weak transcription	Aorta	Aorta
47	chr15:52014000-52023000	Weak transcription	Stomach Mucosa	stomach
48	chr15:52014200-52018000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr15:52014200-52018200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr15:52014400-52018400	Weak transcription	Psoas Muscle	Psoas

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