Variant report

Variant	rs7165594
Chromosome Location	chr15:52020268-52020269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52017711..52021761-chr15:52022558..52024765,3	K562	blood:
2	chr15:52010154..52013648-chr15:52016687..52020314,4	MCF-7	breast:
3	chr15:52018588..52020945-chr15:52028264..52030651,2	MCF-7	breast:
4	chr15:52015204..52021746-chr15:52024939..52031385,17	MCF-7	breast:
5	chr15:52013040..52016397-chr15:52016962..52020800,6	K562	blood:
6	chr15:51942145..51943860-chr15:52018594..52020287,2	K562	blood:
7	chr15:52018882..52021181-chr15:52022278..52024418,2	K562	blood:
8	chr15:52017410..52021684-chr15:52027262..52031539,7	K562	blood:
9	chr15:51973317..51975204-chr15:52018752..52020726,2	K562	blood:
10	chr15:52018406..52020693-chr15:52046360..52048618,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000104112	Chromatin interaction
ENSG00000140280	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1350173	0.83[EUR][1000 genomes]
rs16953082	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs16964486	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16964488	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16964505	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16964506	1.00[CEU][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs16964507	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs16964508	1.00[CEU][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs16964510	0.95[EUR][1000 genomes]
rs16964518	0.95[EUR][1000 genomes]
rs16964528	0.83[EUR][1000 genomes]
rs16964532	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs16964555	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs16964561	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs16964579	0.85[EUR][1000 genomes]
rs16964585	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs16964596	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs17705373	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17705685	1.00[YRI][hapmap]
rs1991267	1.00[JPT][hapmap]
rs2414115	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2570232	1.00[CEU][hapmap]
rs2593181	1.00[JPT][hapmap]
rs2899478	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3751595	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794529	0.88[EUR][1000 genomes]
rs3794533	1.00[YRI][hapmap]
rs4499184	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4775971	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs56221158	0.93[EUR][1000 genomes]
rs60398357	0.83[EUR][1000 genomes]
rs7166954	0.91[EUR][1000 genomes]
rs7167759	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168775	1.00[YRI][hapmap]
rs7174616	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7175121	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7179971	0.91[EUR][1000 genomes]
rs7180093	0.91[EUR][1000 genomes]
rs7180099	1.00[AMR][1000 genomes]
rs73405349	0.83[EUR][1000 genomes]
rs73405355	0.83[EUR][1000 genomes]
rs73405356	0.83[EUR][1000 genomes]
rs73405364	0.85[EUR][1000 genomes]
rs73405388	0.83[EUR][1000 genomes]
rs7342575	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs74015721	0.83[EUR][1000 genomes]
rs74015757	0.86[EUR][1000 genomes]
rs74015761	0.86[EUR][1000 genomes]
rs8034090	1.00[YRI][hapmap]
rs8036648	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038895	1.00[YRI][hapmap]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52000800-52024000	Weak transcription	Gastric	stomach
2	chr15:52007000-52023400	Weak transcription	Brain Anterior Caudate	brain
3	chr15:52008200-52023200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr15:52008400-52023400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:52011400-52023400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:52011600-52023400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:52012400-52024200	Weak transcription	Fetal Lung	lung
8	chr15:52013400-52023600	Weak transcription	Colonic Mucosa	Colon
9	chr15:52013600-52028200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:52013600-52028400	Weak transcription	Fetal Brain Female	brain
11	chr15:52013600-52028800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:52014000-52023000	Weak transcription	Stomach Mucosa	stomach
13	chr15:52014600-52022600	Weak transcription	Fetal Thymus	thymus
14	chr15:52014800-52023000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr15:52016400-52020400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr15:52016400-52020600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:52016800-52023000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr15:52017200-52021200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:52017200-52022000	Weak transcription	Dnd41	blood
20	chr15:52017200-52022000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:52017200-52022400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr15:52017200-52022400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:52017200-52022800	Weak transcription	Liver	Liver
24	chr15:52017200-52023400	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr15:52017400-52022200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr15:52017400-52022400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr15:52017400-52022400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr15:52017400-52023600	Weak transcription	Placenta	Placenta
29	chr15:52017600-52023400	Weak transcription	Fetal Intestine Large	intestine
30	chr15:52018200-52020400	Enhancers	Stomach Smooth Muscle	stomach
31	chr15:52018200-52020400	Enhancers	NHDF-Ad	bronchial
32	chr15:52018400-52020400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:52018400-52020400	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr15:52018400-52020400	Enhancers	K562	blood
35	chr15:52018400-52021000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr15:52018400-52022000	Enhancers	Primary B cells from peripheral blood	blood
37	chr15:52018400-52023000	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr15:52018600-52020400	Enhancers	Small Intestine	intestine
39	chr15:52018800-52020600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:52019000-52020400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr15:52019000-52020400	Enhancers	A549	lung
42	chr15:52019000-52023600	Weak transcription	Fetal Muscle Leg	muscle
43	chr15:52019000-52023800	Weak transcription	Brain Angular Gyrus	brain
44	chr15:52019000-52028200	Weak transcription	Brain Substantia Nigra	brain
45	chr15:52019200-52023400	Weak transcription	Adipose Nuclei	Adipose
46	chr15:52019200-52023600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr15:52019400-52020600	Enhancers	Primary T cells fromperipheralblood	blood
48	chr15:52019400-52023000	Weak transcription	Fetal Intestine Small	intestine
49	chr15:52019400-52023600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr15:52019400-52023800	Weak transcription	Brain Hippocampus Middle	brain

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