Variant report

Variant	rs7166954
Chromosome Location	chr15:52037820-52037821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52028100..52031772-chr15:52032552..52038946,7	MCF-7	breast:
2	chr15:52028203..52034388-chr15:52036095..52042039,7	K562	blood:
3	chr15:52032888..52035475-chr15:52037626..52040413,3	K562	blood:
4	chr15:52035703..52038997-chr15:52042276..52046754,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259377	Chromatin interaction
ENSG00000128872	Chromatin interaction
ENSG00000140280	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10519323	0.89[AMR][1000 genomes]
rs12442283	0.94[AMR][1000 genomes]
rs1350173	0.91[EUR][1000 genomes]
rs1378891	0.86[AMR][1000 genomes]
rs16953082	0.81[EUR][1000 genomes]
rs16964486	0.91[EUR][1000 genomes]
rs16964488	0.87[EUR][1000 genomes]
rs16964505	0.86[EUR][1000 genomes]
rs16964506	0.86[EUR][1000 genomes]
rs16964507	0.86[EUR][1000 genomes]
rs16964508	0.86[EUR][1000 genomes]
rs16964510	0.86[EUR][1000 genomes]
rs16964518	0.86[EUR][1000 genomes]
rs16964528	0.88[EUR][1000 genomes]
rs16964532	0.81[EUR][1000 genomes]
rs17649047	0.89[AMR][1000 genomes]
rs17649178	0.83[AMR][1000 genomes]
rs17705373	0.98[EUR][1000 genomes]
rs17705530	0.86[AMR][1000 genomes]
rs17705649	0.81[AMR][1000 genomes]
rs17705685	0.86[AMR][1000 genomes]
rs2414118	0.89[AMR][1000 genomes]
rs3751595	0.91[EUR][1000 genomes]
rs3794529	0.93[EUR][1000 genomes]
rs3794533	0.86[AMR][1000 genomes]
rs3794537	0.83[AMR][1000 genomes]
rs4774600	0.92[AMR][1000 genomes]
rs4774601	0.86[AMR][1000 genomes]
rs4775971	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4775979	0.86[AMR][1000 genomes]
rs56221158	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60398357	0.87[EUR][1000 genomes]
rs7165594	0.91[EUR][1000 genomes]
rs7167759	0.91[EUR][1000 genomes]
rs7173661	0.92[AMR][1000 genomes]
rs7174616	0.87[EUR][1000 genomes]
rs7175121	0.87[EUR][1000 genomes]
rs7179971	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7180093	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405349	0.87[EUR][1000 genomes]
rs73405355	0.87[EUR][1000 genomes]
rs73405356	0.87[EUR][1000 genomes]
rs73405364	0.89[EUR][1000 genomes]
rs73405388	0.91[EUR][1000 genomes]
rs7342575	0.93[EUR][1000 genomes]
rs74015721	0.87[EUR][1000 genomes]
rs74015757	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74015761	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7496198	0.87[EUR][1000 genomes]
rs8024441	0.86[AMR][1000 genomes]
rs8026507	0.84[AMR][1000 genomes]
rs8027426	0.89[AMR][1000 genomes]
rs8036648	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
2	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52030600-52043200	Weak transcription	Gastric	stomach
2	chr15:52031200-52043000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:52032400-52040800	Weak transcription	K562	blood

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