Variant report

Variant	rs12442283
Chromosome Location	chr15:52038577-52038578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52028100..52031772-chr15:52032552..52038946,7	MCF-7	breast:
2	chr15:52028203..52034388-chr15:52036095..52042039,7	K562	blood:
3	chr15:52032888..52035475-chr15:52037626..52040413,3	K562	blood:
4	chr15:52035703..52038997-chr15:52042276..52046754,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128872	Chromatin interaction
ENSG00000259377	Chromatin interaction
ENSG00000140280	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10519323	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10519325	1.00[EUR][1000 genomes]
rs10519326	1.00[EUR][1000 genomes]
rs12438469	1.00[EUR][1000 genomes]
rs1378891	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1426085	1.00[EUR][1000 genomes]
rs1426086	1.00[EUR][1000 genomes]
rs17649047	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17649178	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17649255	1.00[EUR][1000 genomes]
rs17649391	1.00[EUR][1000 genomes]
rs17649692	1.00[EUR][1000 genomes]
rs17705530	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17705649	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17705685	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17705889	1.00[EUR][1000 genomes]
rs17706076	1.00[EUR][1000 genomes]
rs2052707	1.00[EUR][1000 genomes]
rs2162224	1.00[EUR][1000 genomes]
rs2414118	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2436664	1.00[EUR][1000 genomes]
rs2554309	1.00[EUR][1000 genomes]
rs2554310	1.00[EUR][1000 genomes]
rs2554311	1.00[EUR][1000 genomes]
rs2554323	1.00[EUR][1000 genomes]
rs2554325	1.00[EUR][1000 genomes]
rs2554326	1.00[EUR][1000 genomes]
rs2554330	1.00[EUR][1000 genomes]
rs2554333	1.00[EUR][1000 genomes]
rs2554351	1.00[EUR][1000 genomes]
rs2554352	1.00[EUR][1000 genomes]
rs2554356	1.00[EUR][1000 genomes]
rs2570218	1.00[EUR][1000 genomes]
rs2570219	1.00[EUR][1000 genomes]
rs2570220	1.00[EUR][1000 genomes]
rs2570221	1.00[EUR][1000 genomes]
rs2570227	1.00[EUR][1000 genomes]
rs2570242	1.00[EUR][1000 genomes]
rs2570244	1.00[EUR][1000 genomes]
rs2570245	1.00[EUR][1000 genomes]
rs2570247	1.00[EUR][1000 genomes]
rs2570249	1.00[EUR][1000 genomes]
rs2570250	1.00[EUR][1000 genomes]
rs2570256	1.00[EUR][1000 genomes]
rs2570257	1.00[EUR][1000 genomes]
rs2570259	1.00[EUR][1000 genomes]
rs2570261	1.00[EUR][1000 genomes]
rs2570267	1.00[EUR][1000 genomes]
rs2570270	1.00[EUR][1000 genomes]
rs2570273	1.00[EUR][1000 genomes]
rs2570274	1.00[EUR][1000 genomes]
rs2593165	1.00[EUR][1000 genomes]
rs2593175	1.00[EUR][1000 genomes]
rs2593176	1.00[EUR][1000 genomes]
rs2593180	1.00[EUR][1000 genomes]
rs2623246	1.00[EUR][1000 genomes]
rs2623250	1.00[EUR][1000 genomes]
rs2623252	1.00[EUR][1000 genomes]
rs2623257	1.00[EUR][1000 genomes]
rs2623260	1.00[EUR][1000 genomes]
rs2623264	1.00[EUR][1000 genomes]
rs2623267	1.00[EUR][1000 genomes]
rs2623268	1.00[EUR][1000 genomes]
rs2623269	1.00[EUR][1000 genomes]
rs2623277	1.00[EUR][1000 genomes]
rs2623278	1.00[EUR][1000 genomes]
rs2623287	1.00[EUR][1000 genomes]
rs2899483	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2916174	1.00[EUR][1000 genomes]
rs2959303	1.00[EUR][1000 genomes]
rs34407523	1.00[EUR][1000 genomes]
rs36097346	0.81[ASN][1000 genomes]
rs3794533	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3794537	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4774600	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4774601	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4775971	0.91[AMR][1000 genomes]
rs4775979	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4775987	1.00[EUR][1000 genomes]
rs4775988	1.00[EUR][1000 genomes]
rs56221158	0.89[AMR][1000 genomes]
rs7166322	1.00[EUR][1000 genomes]
rs7166954	0.94[AMR][1000 genomes]
rs7170429	1.00[EUR][1000 genomes]
rs7170700	1.00[EUR][1000 genomes]
rs7173661	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179139	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7179971	0.89[AMR][1000 genomes]
rs7180093	0.89[AMR][1000 genomes]
rs72730966	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73407386	0.81[ASN][1000 genomes]
rs73407396	0.81[ASN][1000 genomes]
rs73411105	1.00[EUR][1000 genomes]
rs74015757	0.84[AMR][1000 genomes]
rs74015761	0.82[AMR][1000 genomes]
rs8024441	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8026507	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8027426	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8042310	1.00[EUR][1000 genomes]
rs919057	1.00[EUR][1000 genomes]
rs990666	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
2	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52030600-52043200	Weak transcription	Gastric	stomach
2	chr15:52031200-52043000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:52032400-52040800	Weak transcription	K562	blood
4	chr15:52038400-52038800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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