Variant report
| Variant | rs2414118 |
|---|---|
| Chromosome Location | chr15:52039629-52039630 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000140280 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10519323 | 0.94[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12442283 | 0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1378891 | 0.91[AMR][1000 genomes] |
| rs17649047 | 0.94[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17649178 | 0.88[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17705530 | 0.91[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17705649 | 0.86[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17705685 | 0.81[AMR][1000 genomes] |
| rs2899483 | 0.81[AMR][1000 genomes] |
| rs36097346 | 0.81[ASN][1000 genomes] |
| rs3794533 | 0.81[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3794537 | 0.88[AMR][1000 genomes] |
| rs4774600 | 0.91[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4774601 | 0.91[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4775971 | 0.91[AMR][1000 genomes] |
| rs4775979 | 0.81[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs56221158 | 0.84[AMR][1000 genomes] |
| rs7166954 | 0.89[AMR][1000 genomes] |
| rs7173661 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7179139 | 0.83[AMR][1000 genomes] |
| rs7179971 | 0.84[AMR][1000 genomes] |
| rs7180093 | 0.84[AMR][1000 genomes] |
| rs72730966 | 0.82[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73407386 | 0.81[ASN][1000 genomes] |
| rs73407396 | 0.81[ASN][1000 genomes] |
| rs74015757 | 0.84[AMR][1000 genomes] |
| rs74015761 | 0.82[AMR][1000 genomes] |
| rs8024441 | 0.91[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs8026507 | 0.81[ASN][1000 genomes] |
| rs8027426 | 0.94[AMR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2830011 | chr15:52027777-52048710 | Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | n/a |
| 2 | nsv569409 | chr15:52028914-52268144 | Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:52030600-52043200 | Weak transcription | Gastric | stomach |
| 2 | chr15:52031200-52043000 | Weak transcription | Rectal Smooth Muscle | rectum |
| 3 | chr15:52032400-52040800 | Weak transcription | K562 | blood |
