Variant report
Variant | rs7179971 |
---|---|
Chromosome Location | chr15:52040033-52040034 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CEBPB | chr15:52039828-52040097 | HepG2 | liver: | n/a | chr15:52039944-52039955 |
2 | CEBPB | chr15:52039818-52040105 | K562 | blood: | n/a | chr15:52039944-52039955 |
3 | CEBPB | chr15:52039879-52040100 | A549 | lung: | n/a | chr15:52039944-52039955 |
4 | CEBPB | chr15:52039854-52040070 | IMR90 | lung: | n/a | chr15:52039944-52039955 |
No data |
(count:2 , 50 per page) page:
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No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000259377 | TF binding region |
TMOD2 | TF binding region |
ENSG00000140280 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10519323 | 0.84[AMR][1000 genomes] |
rs12442283 | 0.89[AMR][1000 genomes] |
rs1350173 | 0.91[EUR][1000 genomes] |
rs1378891 | 0.82[AMR][1000 genomes] |
rs16953082 | 0.81[EUR][1000 genomes] |
rs16964486 | 0.91[EUR][1000 genomes] |
rs16964488 | 0.87[EUR][1000 genomes] |
rs16964505 | 0.86[EUR][1000 genomes] |
rs16964506 | 0.86[EUR][1000 genomes] |
rs16964507 | 0.86[EUR][1000 genomes] |
rs16964508 | 0.86[EUR][1000 genomes] |
rs16964510 | 0.86[EUR][1000 genomes] |
rs16964518 | 0.86[EUR][1000 genomes] |
rs16964528 | 0.88[EUR][1000 genomes] |
rs16964532 | 0.81[EUR][1000 genomes] |
rs17649047 | 0.84[AMR][1000 genomes] |
rs17705373 | 0.98[EUR][1000 genomes] |
rs17705530 | 0.82[AMR][1000 genomes] |
rs17705685 | 0.82[AMR][1000 genomes] |
rs2414118 | 0.84[AMR][1000 genomes] |
rs3751595 | 0.91[EUR][1000 genomes] |
rs3794529 | 0.93[EUR][1000 genomes] |
rs3794533 | 0.82[AMR][1000 genomes] |
rs4774600 | 0.87[AMR][1000 genomes] |
rs4774601 | 0.82[AMR][1000 genomes] |
rs4775971 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4775979 | 0.82[AMR][1000 genomes] |
rs56221158 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs60398357 | 0.87[EUR][1000 genomes] |
rs7165594 | 0.91[EUR][1000 genomes] |
rs7166954 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7167759 | 0.91[EUR][1000 genomes] |
rs7173661 | 0.87[AMR][1000 genomes] |
rs7174616 | 0.87[EUR][1000 genomes] |
rs7175121 | 0.87[EUR][1000 genomes] |
rs7180093 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73405349 | 0.87[EUR][1000 genomes] |
rs73405355 | 0.87[EUR][1000 genomes] |
rs73405356 | 0.87[EUR][1000 genomes] |
rs73405364 | 0.89[EUR][1000 genomes] |
rs73405388 | 0.91[EUR][1000 genomes] |
rs7342575 | 0.93[EUR][1000 genomes] |
rs74015721 | 0.87[EUR][1000 genomes] |
rs74015757 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs74015761 | 0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7496198 | 0.87[EUR][1000 genomes] |
rs8024441 | 0.82[AMR][1000 genomes] |
rs8027426 | 0.84[AMR][1000 genomes] |
rs8036648 | 0.91[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2830011 | chr15:52027777-52048710 | Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | n/a |
2 | nsv569409 | chr15:52028914-52268144 | Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:52030600-52043200 | Weak transcription | Gastric | stomach |
2 | chr15:52031200-52043000 | Weak transcription | Rectal Smooth Muscle | rectum |
3 | chr15:52032400-52040800 | Weak transcription | K562 | blood |