Variant report

Variant	rs60398357
Chromosome Location	chr15:52022279-52022280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52015670..52018450-chr15:52021031..52024231,3	K562	blood:
2	chr15:51912795..51914902-chr15:52021958..52024650,2	K562	blood:
3	chr15:52018882..52021181-chr15:52022278..52024418,2	K562	blood:

Variant related genes	Relation type
ENSG00000104093	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1350173	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs16964486	0.83[EUR][1000 genomes]
rs16964488	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16964528	0.81[EUR][1000 genomes]
rs17705373	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2570232	0.81[EUR][1000 genomes]
rs2623256	0.81[EUR][1000 genomes]
rs3751595	0.83[EUR][1000 genomes]
rs3794529	0.85[EUR][1000 genomes]
rs4775971	0.83[EUR][1000 genomes]
rs7165594	0.83[EUR][1000 genomes]
rs7166954	0.87[EUR][1000 genomes]
rs7167759	0.83[EUR][1000 genomes]
rs7174616	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175121	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7179971	0.87[EUR][1000 genomes]
rs7180093	0.87[EUR][1000 genomes]
rs73405349	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405355	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405356	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405364	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405388	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7342575	0.85[EUR][1000 genomes]
rs74015721	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74015757	0.83[EUR][1000 genomes]
rs74015761	0.83[EUR][1000 genomes]
rs7496198	0.92[EUR][1000 genomes]
rs8036648	0.83[EUR][1000 genomes]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52000800-52024000	Weak transcription	Gastric	stomach
2	chr15:52007000-52023400	Weak transcription	Brain Anterior Caudate	brain
3	chr15:52008200-52023200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr15:52008400-52023400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:52011400-52023400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:52011600-52023400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:52012400-52024200	Weak transcription	Fetal Lung	lung
8	chr15:52013400-52023600	Weak transcription	Colonic Mucosa	Colon
9	chr15:52013600-52028200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:52013600-52028400	Weak transcription	Fetal Brain Female	brain
11	chr15:52013600-52028800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:52014000-52023000	Weak transcription	Stomach Mucosa	stomach
13	chr15:52014600-52022600	Weak transcription	Fetal Thymus	thymus
14	chr15:52014800-52023000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr15:52016800-52023000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr15:52017200-52022400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr15:52017200-52022400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:52017200-52022800	Weak transcription	Liver	Liver
19	chr15:52017200-52023400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr15:52017400-52022400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:52017400-52022400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr15:52017400-52023600	Weak transcription	Placenta	Placenta
23	chr15:52017600-52023400	Weak transcription	Fetal Intestine Large	intestine
24	chr15:52018400-52023000	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr15:52019000-52023600	Weak transcription	Fetal Muscle Leg	muscle
26	chr15:52019000-52023800	Weak transcription	Brain Angular Gyrus	brain
27	chr15:52019000-52028200	Weak transcription	Brain Substantia Nigra	brain
28	chr15:52019200-52023400	Weak transcription	Adipose Nuclei	Adipose
29	chr15:52019200-52023600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:52019400-52023000	Weak transcription	Fetal Intestine Small	intestine
31	chr15:52019400-52023600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr15:52019400-52023800	Weak transcription	Brain Hippocampus Middle	brain
33	chr15:52019600-52023200	Weak transcription	Fetal Stomach	stomach
34	chr15:52019600-52024000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:52019800-52023000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr15:52019800-52023600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:52019800-52023600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:52019800-52023800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr15:52019800-52023800	Weak transcription	Aorta	Aorta
40	chr15:52020000-52022400	Weak transcription	Lung	lung
41	chr15:52020000-52022400	Weak transcription	Thymus	Thymus
42	chr15:52020000-52022600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:52020000-52023200	Weak transcription	Duodenum Mucosa	Duodenum
44	chr15:52020000-52023200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr15:52020000-52023200	Weak transcription	HSMMtube	muscle
46	chr15:52020000-52023200	Weak transcription	NHEK	skin
47	chr15:52020000-52023400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:52020000-52023400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr15:52020000-52023600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr15:52020000-52023600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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