Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52110163..52112996-chr15:52119410..52123831,4	K562	blood:

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1350173	0.85[EUR][1000 genomes]
rs16953082	0.89[EUR][1000 genomes]
rs16964488	0.81[EUR][1000 genomes]
rs16964505	0.84[EUR][1000 genomes]
rs16964506	0.84[EUR][1000 genomes]
rs16964507	0.84[EUR][1000 genomes]
rs16964508	0.84[EUR][1000 genomes]
rs16964510	0.84[EUR][1000 genomes]
rs16964518	0.84[EUR][1000 genomes]
rs16964523	0.81[AMR][1000 genomes]
rs16964528	0.82[EUR][1000 genomes]
rs16964532	0.89[EUR][1000 genomes]
rs16964555	0.84[EUR][1000 genomes]
rs16964561	0.84[EUR][1000 genomes]
rs16964579	0.84[EUR][1000 genomes]
rs16964585	0.84[EUR][1000 genomes]
rs16964596	0.84[EUR][1000 genomes]
rs2570219	0.83[AMR][1000 genomes]
rs2570220	0.81[AMR][1000 genomes]
rs2570221	0.81[AMR][1000 genomes]
rs2570232	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2570234	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs2623253	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs2623264	0.81[AMR][1000 genomes]
rs2916174	0.81[AMR][1000 genomes]
rs4775971	0.80[EUR][1000 genomes]
rs56221158	0.86[EUR][1000 genomes]
rs60398357	0.81[EUR][1000 genomes]
rs7174616	0.81[EUR][1000 genomes]
rs7175121	0.81[EUR][1000 genomes]
rs73405349	0.81[EUR][1000 genomes]
rs73405355	0.81[EUR][1000 genomes]
rs73405356	0.81[EUR][1000 genomes]
rs73405364	0.83[EUR][1000 genomes]
rs73405388	0.85[EUR][1000 genomes]
rs73409011	0.81[AMR][1000 genomes]
rs74015721	0.81[EUR][1000 genomes]
rs74015757	0.80[EUR][1000 genomes]
rs74015761	0.80[EUR][1000 genomes]
rs7496198	0.81[EUR][1000 genomes]
rs990666	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52099800-52113800	Weak transcription	Aorta	Aorta
2	chr15:52100000-52113200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr15:52101600-52113000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:52102000-52113400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:52104400-52113400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr15:52104400-52113600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:52105600-52113200	Weak transcription	Primary B cells from cord blood	blood
8	chr15:52106800-52113400	Weak transcription	Brain Germinal Matrix	brain
9	chr15:52107000-52113200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:52107000-52113600	Weak transcription	Primary T cells from cord blood	blood
11	chr15:52107000-52113800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:52107200-52112800	Weak transcription	Brain Angular Gyrus	brain
13	chr15:52107200-52113000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:52107200-52121400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:52110000-52113800	Weak transcription	Lung	lung
16	chr15:52110600-52113400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:52110600-52114800	Weak transcription	Fetal Stomach	stomach
18	chr15:52111400-52117400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search: