Variant report

Variant	rs73405364
Chromosome Location	chr15:52024879-52024880
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51997906..52000590-chr15:52024148..52026004,2	MCF-7	breast:
2	chr15:52012107..52014032-chr15:52023388..52025681,2	K562	blood:
3	chr15:52002742..52004739-chr15:52023615..52025636,2	MCF-7	breast:
4	chr15:52017571..52019095-chr15:52024523..52026773,2	K562	blood:
5	chr15:52022549..52025740-chr15:52026646..52031094,6	K562	blood:

Variant related genes	Relation type
ENSG00000140280	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1350173	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs16964486	0.85[EUR][1000 genomes]
rs16964488	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16964505	0.80[EUR][1000 genomes]
rs16964506	0.80[EUR][1000 genomes]
rs16964507	0.80[EUR][1000 genomes]
rs16964508	0.80[EUR][1000 genomes]
rs16964510	0.80[EUR][1000 genomes]
rs16964518	0.80[EUR][1000 genomes]
rs16964528	0.83[EUR][1000 genomes]
rs17705373	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2570232	0.83[EUR][1000 genomes]
rs2623256	0.83[EUR][1000 genomes]
rs3751595	0.85[EUR][1000 genomes]
rs3794529	0.87[EUR][1000 genomes]
rs4775971	0.85[EUR][1000 genomes]
rs60398357	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165594	0.85[EUR][1000 genomes]
rs7166954	0.89[EUR][1000 genomes]
rs7167759	0.85[EUR][1000 genomes]
rs7174616	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175121	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7179971	0.89[EUR][1000 genomes]
rs7180093	0.89[EUR][1000 genomes]
rs73405349	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405355	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405356	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405388	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7342575	0.87[EUR][1000 genomes]
rs74015721	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74015757	0.85[EUR][1000 genomes]
rs74015761	0.85[EUR][1000 genomes]
rs7496198	0.94[EUR][1000 genomes]
rs8036648	0.85[EUR][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52013600-52028200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:52013600-52028400	Weak transcription	Fetal Brain Female	brain
3	chr15:52013600-52028800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:52019000-52028200	Weak transcription	Brain Substantia Nigra	brain
5	chr15:52020000-52028800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:52020200-52028000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:52020200-52029000	Weak transcription	NH-A	brain
8	chr15:52020400-52028000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:52022400-52026000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:52022600-52025400	Enhancers	Small Intestine	intestine
11	chr15:52023000-52025000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr15:52023000-52025000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr15:52023000-52025200	Flanking Active TSS	Dnd41	blood
14	chr15:52023000-52025400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:52023200-52025200	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr15:52023200-52025200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr15:52023200-52025200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr15:52023600-52025000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:52023600-52028200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:52023800-52025000	Enhancers	Brain Angular Gyrus	brain
21	chr15:52023800-52025400	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr15:52024000-52025000	Enhancers	Pancreas	Pancrea
23	chr15:52024000-52025400	Enhancers	Esophagus	oesophagus
24	chr15:52024200-52025000	Enhancers	Left Ventricle	heart
25	chr15:52024200-52025000	Enhancers	Lung	lung
26	chr15:52024200-52025200	Enhancers	Right Atrium	heart
27	chr15:52024200-52025200	Enhancers	HSMMtube	muscle
28	chr15:52024200-52026200	Enhancers	Psoas Muscle	Psoas
29	chr15:52024200-52028000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr15:52024200-52028000	Weak transcription	Hela-S3	cervix
31	chr15:52024200-52028400	Flanking Active TSS	GM12878-XiMat	blood
32	chr15:52024400-52025000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:52024400-52025000	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr15:52024400-52025200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr15:52024400-52025400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:52024400-52025400	Enhancers	Liver	Liver
37	chr15:52024400-52025400	Enhancers	Colon Smooth Muscle	Colon
38	chr15:52024400-52025400	Genic enhancers	K562	blood
39	chr15:52024400-52025600	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr15:52024400-52026400	Weak transcription	Brain Hippocampus Middle	brain
41	chr15:52024400-52026800	Enhancers	Spleen	Spleen
42	chr15:52024400-52027800	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr15:52024400-52027800	Enhancers	Brain Anterior Caudate	brain
44	chr15:52024400-52028000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:52024400-52028400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:52024400-52028400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:52024400-52028400	Enhancers	Fetal Thymus	thymus
48	chr15:52024400-52028400	Enhancers	Thymus	Thymus
49	chr15:52024400-52028800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:52024400-52028800	Weak transcription	Right Ventricle	heart

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