Variant report

No.	Distal block	Cell Line	Cell type
1	chr15:52028100..52031772-chr15:52032552..52038946,7	MCF-7	breast:
2	chr15:52027363..52032665-chr15:52041435..52046045,23	MCF-7	breast:
3	chr15:51913765..51915437-chr15:52031923..52034915,2	MCF-7	breast:
4	chr15:52030420..52032691-chr15:52120807..52123246,2	MCF-7	breast:
5	chr15:52028355..52032748-chr15:52040539..52046492,10	K562	blood:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1350173	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16964486	0.83[EUR][1000 genomes]
rs16964488	0.96[EUR][1000 genomes]
rs16964528	0.81[EUR][1000 genomes]
rs17705373	0.89[EUR][1000 genomes]
rs2570232	0.85[EUR][1000 genomes]
rs2623256	0.85[EUR][1000 genomes]
rs3751595	0.83[EUR][1000 genomes]
rs3794529	0.85[EUR][1000 genomes]
rs4775971	0.87[EUR][1000 genomes]
rs56221158	0.81[EUR][1000 genomes]
rs60398357	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7165594	0.83[EUR][1000 genomes]
rs7166954	0.91[EUR][1000 genomes]
rs7167759	0.83[EUR][1000 genomes]
rs7174616	0.96[EUR][1000 genomes]
rs7175121	0.96[EUR][1000 genomes]
rs7179971	0.91[EUR][1000 genomes]
rs7180093	0.91[EUR][1000 genomes]
rs73405349	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73405355	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73405356	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73405364	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7342575	0.85[EUR][1000 genomes]
rs74015721	0.96[EUR][1000 genomes]
rs74015757	0.87[EUR][1000 genomes]
rs74015761	0.87[EUR][1000 genomes]
rs7496198	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8036648	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
2	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52030600-52032600	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr15:52030600-52032800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:52030600-52043200	Weak transcription	Gastric	stomach
4	chr15:52030800-52032600	Enhancers	Primary T cells from cord blood	blood
5	chr15:52030800-52032800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr15:52031000-52032600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr15:52031000-52033400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:52031200-52043000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr15:52032000-52032600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr15:52032400-52032600	Enhancers	Primary hematopoietic stem cells	blood
11	chr15:52032400-52032800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:52032400-52040800	Weak transcription	K562	blood

Quick Search: