Variant report

Variant	rs56221158
Chromosome Location	chr15:52042556-52042557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:52041917-52044815	Raji	blood:	n/a	n/a
2	BHLHE40	chr15:52042414-52042608	GM12878	blood:	n/a	n/a
3	POLR2A	chr15:52042188-52043672	GM12891	blood:	n/a	n/a
4	RELA	chr15:52042201-52043746	GM12891	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52028180..52031136-chr15:52040562..52045385,6	MCF-7	breast:
2	chr15:52041956..52043686-chr15:52074164..52076601,2	MCF-7	breast:
3	chr15:52029591..52032408-chr15:52042418..52044684,3	K562	blood:
4	chr15:52016515..52018648-chr15:52040542..52043046,2	MCF-7	breast:
5	chr15:52027363..52032665-chr15:52041435..52046045,23	MCF-7	breast:
6	chr15:52033609..52037215-chr15:52040115..52042966,3	MCF-7	breast:
7	chr15:52028355..52032748-chr15:52040539..52046492,10	K562	blood:

No data

Variant related genes	Relation type
TMOD2	TF binding region
ENSG00000259377	TF binding region
ENSG00000140280	Chromatin interaction
ENSG00000128872	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10519323	0.84[AMR][1000 genomes]
rs12442283	0.89[AMR][1000 genomes]
rs1350173	0.81[EUR][1000 genomes]
rs1378891	0.82[AMR][1000 genomes]
rs16953082	0.93[EUR][1000 genomes]
rs16964486	0.93[EUR][1000 genomes]
rs16964505	0.97[EUR][1000 genomes]
rs16964506	0.97[EUR][1000 genomes]
rs16964507	0.97[EUR][1000 genomes]
rs16964508	0.97[EUR][1000 genomes]
rs16964510	0.97[EUR][1000 genomes]
rs16964518	0.97[EUR][1000 genomes]
rs16964528	0.86[EUR][1000 genomes]
rs16964532	0.93[EUR][1000 genomes]
rs16964555	0.88[EUR][1000 genomes]
rs16964561	0.88[EUR][1000 genomes]
rs16964579	0.88[EUR][1000 genomes]
rs16964585	0.88[EUR][1000 genomes]
rs16964596	0.88[EUR][1000 genomes]
rs16964639	0.80[EUR][1000 genomes]
rs16964645	0.83[EUR][1000 genomes]
rs17649047	0.84[AMR][1000 genomes]
rs17705373	0.86[EUR][1000 genomes]
rs17705530	0.82[AMR][1000 genomes]
rs17705685	0.82[AMR][1000 genomes]
rs2414115	0.80[EUR][1000 genomes]
rs2414118	0.84[AMR][1000 genomes]
rs2570232	0.86[EUR][1000 genomes]
rs2623256	0.86[EUR][1000 genomes]
rs2899478	0.80[EUR][1000 genomes]
rs3751595	0.93[EUR][1000 genomes]
rs3794529	0.90[EUR][1000 genomes]
rs3794533	0.82[AMR][1000 genomes]
rs4774600	0.87[AMR][1000 genomes]
rs4774601	0.82[AMR][1000 genomes]
rs4775971	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4775979	0.82[AMR][1000 genomes]
rs7165594	0.93[EUR][1000 genomes]
rs7166954	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7167759	0.93[EUR][1000 genomes]
rs7173661	0.87[AMR][1000 genomes]
rs7179971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7180093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73405388	0.81[EUR][1000 genomes]
rs7342575	0.90[EUR][1000 genomes]
rs74015757	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74015761	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8024441	0.82[AMR][1000 genomes]
rs8027426	0.84[AMR][1000 genomes]
rs8036648	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
2	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52030600-52043200	Weak transcription	Gastric	stomach
2	chr15:52031200-52043000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:52041400-52042600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:52041600-52042800	Enhancers	K562	blood
5	chr15:52042200-52042600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:52042200-52042600	Enhancers	GM12878-XiMat	blood
7	chr15:52042200-52043000	Enhancers	Primary B cells from peripheral blood	blood

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