Variant report

Variant	rs8027426
Chromosome Location	chr15:52060418-52060419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52041772..52043796-chr15:52059873..52062736,2	MCF-7	breast:
2	chr15:52058591..52061806-chr15:52062033..52065705,3	K562	blood:
3	chr15:52049744..52051270-chr15:52058518..52061301,2	K562	blood:
4	chr15:52043955..52045654-chr15:52058986..52062034,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128872	Chromatin interaction
ENSG00000259377	Chromatin interaction
ENSG00000140280	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs1025185	1.00[EUR][1000 genomes]
rs10519323	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519325	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs10519326	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs12438469	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12442283	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1378891	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1426085	1.00[EUR][1000 genomes]
rs1426086	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs16964523	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs17649047	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17649178	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17649208	1.00[JPT][hapmap]
rs17649255	0.89[CHD][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17649391	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs17649692	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs17649801	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17705530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17705649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17705685	1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17705889	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs17706076	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2052707	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2162224	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs2414118	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2436664	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2470613	1.00[EUR][1000 genomes]
rs2554309	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2554310	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2554311	1.00[EUR][1000 genomes]
rs2554318	1.00[EUR][1000 genomes]
rs2554321	0.90[MEX][hapmap];1.00[TSI][hapmap]
rs2554323	1.00[EUR][1000 genomes]
rs2554325	1.00[EUR][1000 genomes]
rs2554326	1.00[EUR][1000 genomes]
rs2554330	1.00[EUR][1000 genomes]
rs2554333	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2554341	0.90[MEX][hapmap];1.00[TSI][hapmap]
rs2554351	1.00[EUR][1000 genomes]
rs2554352	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2554356	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2570218	0.86[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2570219	1.00[EUR][1000 genomes]
rs2570220	1.00[EUR][1000 genomes]
rs2570221	1.00[EUR][1000 genomes]
rs2570227	1.00[EUR][1000 genomes]
rs2570232	1.00[CHD][hapmap];0.81[MEX][hapmap]
rs2570242	0.89[CHD][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2570244	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2570245	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2570247	1.00[EUR][1000 genomes]
rs2570249	0.88[CHD][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2570250	0.89[CHD][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2570256	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2570257	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2570259	1.00[EUR][1000 genomes]
rs2570261	1.00[EUR][1000 genomes]
rs2570267	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2570270	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2570273	0.86[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2570274	1.00[EUR][1000 genomes]
rs2593165	1.00[EUR][1000 genomes]
rs2593175	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2593176	1.00[EUR][1000 genomes]
rs2593180	1.00[EUR][1000 genomes]
rs2623246	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2623248	0.86[JPT][hapmap]
rs2623250	0.89[CHD][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2623252	1.00[EUR][1000 genomes]
rs2623257	1.00[EUR][1000 genomes]
rs2623260	1.00[EUR][1000 genomes]
rs2623264	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2623267	1.00[EUR][1000 genomes]
rs2623268	1.00[EUR][1000 genomes]
rs2623269	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2623277	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2623278	1.00[EUR][1000 genomes]
rs2623287	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs2899483	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2916174	1.00[EUR][1000 genomes]
rs2959297	1.00[EUR][1000 genomes]
rs2959303	1.00[EUR][1000 genomes]
rs3099570	1.00[EUR][1000 genomes]
rs34407523	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs36097346	1.00[ASN][1000 genomes]
rs3794533	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794537	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4774600	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4774601	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775971	0.81[CHD][hapmap];0.97[AMR][1000 genomes]
rs4775979	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775987	1.00[EUR][1000 genomes]
rs4775988	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs4775989	1.00[EUR][1000 genomes]
rs56221158	0.84[AMR][1000 genomes]
rs7166322	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7166954	0.89[AMR][1000 genomes]
rs7170429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7170700	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7173661	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7179139	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7179971	0.84[AMR][1000 genomes]
rs7180093	0.84[AMR][1000 genomes]
rs72730966	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73407386	1.00[ASN][1000 genomes]
rs73407396	1.00[ASN][1000 genomes]
rs73409011	0.89[ASN][1000 genomes]
rs73411105	1.00[EUR][1000 genomes]
rs74015757	0.84[AMR][1000 genomes]
rs74015761	0.82[AMR][1000 genomes]
rs8024441	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026507	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042310	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs919056	0.86[JPT][hapmap]
rs919057	0.86[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs990666	0.86[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv3411789	chr15:52052789-52087519	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52051200-52077600	Weak transcription	Psoas Muscle	Psoas
2	chr15:52051400-52061200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:52051400-52068400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:52051400-52068400	Weak transcription	Stomach Mucosa	stomach
5	chr15:52052200-52060800	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:52052200-52061200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:52052200-52064200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:52052200-52068200	Weak transcription	Fetal Intestine Small	intestine
9	chr15:52052200-52068600	Weak transcription	HMEC	breast
10	chr15:52052200-52074600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:52052200-52076000	Weak transcription	Fetal Brain Male	brain
12	chr15:52052200-52101800	Weak transcription	Colonic Mucosa	Colon
13	chr15:52052400-52060600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:52052400-52061000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:52052400-52067000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:52052400-52068200	Weak transcription	Fetal Intestine Large	intestine
17	chr15:52052400-52073200	Weak transcription	NHDF-Ad	bronchial
18	chr15:52052400-52078400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr15:52052600-52065200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:52052600-52106600	Weak transcription	HSMM	muscle
21	chr15:52053400-52090600	Weak transcription	Pancreas	Pancrea
22	chr15:52057600-52060600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr15:52058400-52061400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:52058400-52064200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:52058400-52067600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:52058600-52068200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr15:52058800-52072800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr15:52059800-52060800	Enhancers	Primary B cells from cord blood	blood
29	chr15:52059800-52060800	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr15:52060000-52060600	Genic enhancers	Primary T cells fromperipheralblood	blood
31	chr15:52060000-52060600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr15:52060000-52060600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:52060000-52060600	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr15:52060000-52060600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:52060000-52060600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:52060000-52060600	Genic enhancers	Brain Anterior Caudate	brain
37	chr15:52060000-52060600	Strong transcription	Brain Germinal Matrix	brain
38	chr15:52060000-52060600	Genic enhancers	Brain Inferior Temporal Lobe	brain
39	chr15:52060000-52060600	Enhancers	Brain Substantia Nigra	brain
40	chr15:52060000-52060600	Enhancers	Duodenum Mucosa	Duodenum
41	chr15:52060000-52060600	Genic enhancers	Left Ventricle	heart
42	chr15:52060000-52060600	Genic enhancers	Lung	lung
43	chr15:52060000-52060600	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr15:52060000-52060600	Enhancers	HUVEC	blood vessel
45	chr15:52060000-52060600	Enhancers	K562	blood
46	chr15:52060000-52060800	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr15:52060000-52060800	Genic enhancers	Primary monocytes fromperipheralblood	blood
48	chr15:52060000-52060800	Enhancers	Primary B cells from peripheral blood	blood
49	chr15:52060000-52060800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr15:52060000-52060800	Enhancers	Primary T helper cells PMA-I stimulated	--

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