The 2.0 version of rSNPBase

Variant report

Variant rs17649208
Chromosome Location chr15:52096751-52096752
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52052200-52101800 Weak transcription Colonic Mucosa Colon
2 chr15:52052600-52106600 Weak transcription HSMM muscle
3 chr15:52060200-52103400 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr15:52060800-52101200 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr15:52060800-52102600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
6 chr15:52060800-52105400 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr15:52061600-52112000 Weak transcription NHLF lung
8 chr15:52061800-52098600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr15:52074000-52100000 Weak transcription NHDF-Ad bronchial
10 chr15:52074800-52102800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr15:52076400-52098400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
12 chr15:52076800-52104400 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr15:52077200-52098600 Weak transcription Fetal Brain Male brain
14 chr15:52079000-52098400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr15:52079200-52098600 Weak transcription Primary hematopoietic stem cells short term culture blood
16 chr15:52080000-52099000 Weak transcription Colon Smooth Muscle Colon
17 chr15:52080800-52102600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr15:52085800-52105200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr15:52085800-52108800 Weak transcription Pancreatic Islets Pancreatic Islet
20 chr15:52086400-52098400 Weak transcription Brain Substantia Nigra brain
21 chr15:52089000-52106400 Weak transcription HSMMtube muscle
22 chr15:52089200-52107200 Strong transcription Monocytes-CD14+_RO01746 blood
23 chr15:52089400-52099200 Weak transcription Duodenum Mucosa Duodenum
24 chr15:52089600-52101200 Weak transcription Muscle Satellite Cultured Cells --
25 chr15:52089800-52098400 Weak transcription Fetal Intestine Large intestine
26 chr15:52089800-52101000 Weak transcription Fetal Intestine Small intestine
27 chr15:52090400-52104400 Strong transcription Primary monocytes fromperipheralblood blood
28 chr15:52090600-52096800 Strong transcription Breast Myoepithelial Primary Cells Breast
29 chr15:52091000-52098200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr15:52091200-52098600 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr15:52091200-52104600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr15:52091200-52109400 Weak transcription Gastric stomach
33 chr15:52091400-52098400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr15:52091400-52098400 Weak transcription Esophagus oesophagus
35 chr15:52091400-52098400 Weak transcription Rectal Smooth Muscle rectum
36 chr15:52091400-52099400 Weak transcription Pancreas Pancrea
37 chr15:52091400-52103600 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr15:52091600-52098200 Weak transcription Primary T helper naive cells fromperipheralblood blood
39 chr15:52091600-52098400 Weak transcription Primary hematopoietic stem cells blood
40 chr15:52091600-52098400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr15:52091600-52098600 Weak transcription Spleen Spleen
42 chr15:52091800-52098400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr15:52091800-52098400 Weak transcription Aorta Aorta
44 chr15:52091800-52098400 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr15:52091800-52108200 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr15:52092000-52097200 Weak transcription Primary T helper cells fromperipheralblood blood
47 chr15:52092000-52098200 Weak transcription Primary neutrophils fromperipheralblood blood
48 chr15:52092000-52098400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
49 chr15:52092000-52098400 Weak transcription Brain Angular Gyrus brain
50 chr15:52092000-52098400 Weak transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015