Variant report

Variant	rs8036437
Chromosome Location	chr15:92431797-92431798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12593787	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594572	1.00[ASN][1000 genomes]
rs4077721	0.81[JPT][hapmap]
rs4294800	0.81[JPT][hapmap]
rs6496870	0.81[JPT][hapmap]
rs6496874	0.81[JPT][hapmap]
rs6496877	1.00[JPT][hapmap]
rs6496878	1.00[JPT][hapmap]
rs7174549	0.81[JPT][hapmap]
rs7179958	1.00[JPT][hapmap]
rs8028382	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92404400-92433600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:92410600-92445400	Weak transcription	Aorta	Aorta
3	chr15:92415000-92432600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:92418000-92435400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:92418400-92435800	Weak transcription	Primary T cells from cord blood	blood
6	chr15:92423600-92435800	Enhancers	Brain Cingulate Gyrus	brain
7	chr15:92424400-92433000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr15:92425000-92436400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:92425600-92433800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr15:92426200-92436000	Enhancers	Brain Angular Gyrus	brain
11	chr15:92426800-92436200	Enhancers	Brain Substantia Nigra	brain
12	chr15:92426800-92437200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:92428200-92436000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr15:92428400-92438200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr15:92428600-92442600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr15:92428800-92445600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:92429000-92431800	Enhancers	Left Ventricle	heart
18	chr15:92429000-92432400	Weak transcription	Esophagus	oesophagus
19	chr15:92429000-92432800	Enhancers	Fetal Heart	heart
20	chr15:92429200-92431800	Enhancers	Adipose Nuclei	Adipose
21	chr15:92429600-92431800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr15:92429600-92432200	Enhancers	Lung	lung
23	chr15:92429600-92433000	Enhancers	Right Atrium	heart
24	chr15:92430000-92433400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr15:92430200-92433800	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr15:92430200-92438000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr15:92430400-92432000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr15:92430400-92432800	Enhancers	Fetal Stomach	stomach
29	chr15:92430400-92436000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:92430400-92436600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr15:92430600-92431800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:92430600-92433000	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr15:92430600-92433200	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr15:92430600-92436000	Enhancers	HMEC	breast
35	chr15:92430800-92431800	Enhancers	Stomach Smooth Muscle	stomach
36	chr15:92430800-92431800	Enhancers	NHLF	lung
37	chr15:92430800-92432000	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr15:92430800-92432400	Weak transcription	Gastric	stomach
39	chr15:92430800-92433000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr15:92430800-92434800	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr15:92430800-92435000	Weak transcription	Brain Germinal Matrix	brain
42	chr15:92430800-92435400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:92430800-92440800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr15:92431000-92432000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr15:92431000-92435000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr15:92431000-92440800	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr15:92431200-92432400	Weak transcription	Colonic Mucosa	Colon
48	chr15:92431200-92432600	Enhancers	Fetal Lung	lung
49	chr15:92431200-92435000	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr15:92431200-92436000	Enhancers	Brain Anterior Caudate	brain

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