Variant report

Variant	rs8036544
Chromosome Location	chr15:42755490-42755491
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1048571	0.82[CEU][hapmap]
rs11635041	0.86[EUR][1000 genomes]
rs11635889	0.82[CEU][hapmap]
rs11636209	0.82[CEU][hapmap]
rs11638666	0.85[EUR][1000 genomes]
rs12101559	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs12439377	0.82[CEU][hapmap]
rs12440118	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs12442040	0.84[ASN][1000 genomes]
rs12442046	0.84[ASN][1000 genomes]
rs12443246	0.84[ASN][1000 genomes]
rs12898937	0.95[ASN][1000 genomes]
rs12913324	0.95[ASN][1000 genomes]
rs16973261	0.84[ASN][1000 genomes]
rs16973265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17708630	0.88[CEU][hapmap]
rs17709596	0.88[EUR][1000 genomes]
rs17765354	0.88[CEU][hapmap]
rs17766258	0.82[CEU][hapmap]
rs1900920	0.95[ASN][1000 genomes]
rs2412715	0.98[ASN][1000 genomes]
rs2595938	0.90[EUR][1000 genomes]
rs2617235	0.95[ASN][1000 genomes]
rs2617237	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2617238	0.80[ASN][1000 genomes]
rs28886308	0.95[ASN][1000 genomes]
rs3742997	0.82[ASN][1000 genomes]
rs3742999	0.88[CEU][hapmap]
rs4924678	0.95[ASN][1000 genomes]
rs57734638	0.84[ASN][1000 genomes]
rs60569090	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61115119	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62022308	0.86[EUR][1000 genomes]
rs62022310	0.86[EUR][1000 genomes]
rs62022313	0.80[EUR][1000 genomes]
rs62022314	0.94[EUR][1000 genomes]
rs62022315	0.93[EUR][1000 genomes]
rs62022316	0.88[EUR][1000 genomes]
rs62022318	0.87[EUR][1000 genomes]
rs7169615	0.98[ASN][1000 genomes]
rs7181688	0.84[ASN][1000 genomes]
rs72707484	0.94[EUR][1000 genomes]
rs8023929	0.82[ASN][1000 genomes]
rs8026817	0.84[ASN][1000 genomes]
rs8027283	0.89[CEU][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8034232	0.90[ASN][1000 genomes]
rs8034238	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv832987	chr15:42627447-42792348	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv3334708	chr15:42664344-42827738	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42701200-42766600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:42720400-42759200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:42737200-42764800	Weak transcription	A549	lung
4	chr15:42744000-42757400	Weak transcription	Gastric	stomach
5	chr15:42744000-42757600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:42744200-42755600	Weak transcription	Spleen	Spleen
7	chr15:42744200-42756800	Weak transcription	Dnd41	blood
8	chr15:42744200-42757000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:42744200-42757400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr15:42744200-42757400	Weak transcription	HepG2	liver
11	chr15:42744200-42757600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr15:42744200-42762200	Weak transcription	K562	blood
13	chr15:42744200-42763200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:42744200-42767000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:42744200-42781800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr15:42744200-42782400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:42746800-42755600	Weak transcription	Hela-S3	cervix
18	chr15:42749200-42761800	Weak transcription	Brain Germinal Matrix	brain
19	chr15:42749600-42764600	Weak transcription	Colonic Mucosa	Colon
20	chr15:42749800-42756600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:42749800-42757400	Weak transcription	Placenta	Placenta
22	chr15:42749800-42758000	Weak transcription	Pancreas	Pancrea
23	chr15:42750000-42755600	Weak transcription	Esophagus	oesophagus
24	chr15:42750000-42782600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:42750200-42756000	Weak transcription	Primary T cells from cord blood	blood
26	chr15:42750200-42763600	Weak transcription	Right Atrium	heart
27	chr15:42750200-42766400	Weak transcription	Right Ventricle	heart
28	chr15:42750200-42782400	Weak transcription	Aorta	Aorta
29	chr15:42750400-42755600	Weak transcription	Brain Anterior Caudate	brain
30	chr15:42750400-42756800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr15:42750400-42757200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:42750400-42757200	Weak transcription	Fetal Brain Female	brain
33	chr15:42750400-42761600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr15:42750400-42762800	Weak transcription	HMEC	breast
35	chr15:42750400-42765000	Weak transcription	Fetal Brain Male	brain
36	chr15:42750600-42755600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr15:42750600-42756600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr15:42750600-42756600	Weak transcription	NHEK	skin
39	chr15:42750600-42756800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:42750600-42756800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr15:42750600-42756800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr15:42750600-42757200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr15:42750600-42757200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:42750600-42757200	Weak transcription	HUVEC	blood vessel
45	chr15:42750600-42757400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr15:42750600-42757400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:42750600-42757400	Weak transcription	Brain Hippocampus Middle	brain
48	chr15:42750600-42757800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:42750600-42757800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr15:42750600-42760400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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