Variant report

Variant	rs8061920
Chromosome Location	chr16:30914737-30914738
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:30912530..30915248-chr16:30945909..30947809,2	K562	blood:
2	chr16:30884479..30890188-chr16:30910598..30915198,10	MCF-7	breast:
3	chr16:30912499..30918732-chr16:30930262..30935475,13	MCF-7	breast:
4	chr16:30885099..30888289-chr16:30911609..30917260,6	K562	blood:
5	chr16:30796087..30799228-chr16:30911236..30914996,3	MCF-7	breast:
6	chr16:30910564..30915241-chr16:30931582..30935352,8	MCF-7	breast:
7	chr16:30803684..30806177-chr16:30912037..30915319,3	MCF-7	breast:
8	chr16:30815951..30818451-chr16:30913360..30915131,3	MCF-7	breast:
9	chr16:30912902..30918884-chr16:30920570..30924921,9	MCF-7	breast:
10	chr16:30758037..30761391-chr16:30912017..30915043,4	K562	blood:
11	chr16:30913615..30915128-chr16:31190546..31193094,2	K562	blood:
12	chr16:30913031..30919294-chr16:30922948..30927916,8	MCF-7	breast:
13	chr16:30789163..30792393-chr16:30910232..30915668,5	K562	blood:
14	chr16:30894706..30896281-chr16:30913366..30915721,2	K562	blood:
15	chr16:30884422..30889769-chr16:30911523..30915041,8	MCF-7	breast:
16	chr16:30876290..30879786-chr16:30913086..30915065,3	MCF-7	breast:
17	chr16:30758037..30760213-chr16:30913543..30915112,2	K562	blood:
18	chr16:30792183..30793764-chr16:30912337..30915253,2	K562	blood:
19	chr16:30912851..30916302-chr16:30932424..30935969,6	K562	blood:
20	chr16:30822842..30825891-chr16:30913265..30916263,3	K562	blood:
21	chr16:30912898..30915035-chr16:30962438..30965039,2	MCF-7	breast:
22	chr16:30912249..30916036-chr16:30924417..30927722,3	K562	blood:
23	chr16:30913321..30915990-chr16:30931581..30936330,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000265991	Chromatin interaction
ENSG00000099364	Chromatin interaction
ENSG00000260083	Chromatin interaction
ENSG00000102870	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000260852	Chromatin interaction
ENSG00000230447	Chromatin interaction
ENSG00000156873	Chromatin interaction
ENSG00000262026	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12102485	0.81[AFR][1000 genomes]
rs13333418	0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1870292	0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28572417	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34212827	0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4405566	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7184263	0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203711	0.81[YRI][hapmap]
rs73526635	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526645	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8048593	0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8050229	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8055067	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8062731	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9929927	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9940894	0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
4	nsv905728	chr16:30642867-30928970	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	171 gene(s)	inside rSNPs	diseases
5	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
6	esv1825223	chr16:30669091-30971810	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
7	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
8	nsv905733	chr16:30796919-31004812	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
9	nsv869652	chr16:30799471-30951038	Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
10	nsv833189	chr16:30819708-30960795	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
11	nsv833190	chr16:30845051-31007863	Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
12	nsv833191	chr16:30864242-31048051	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	115 gene(s)	inside rSNPs	diseases
13	nsv905734	chr16:30877544-31191482	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
14	nsv905735	chr16:30890538-31247924	Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	264 gene(s)	inside rSNPs	diseases
15	nsv905736	chr16:30900235-30995528	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
16	nsv905737	chr16:30900235-31014179	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
17	nsv457483	chr16:30903679-31191482	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
18	nsv571820	chr16:30903679-31191482	Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
19	nsv905738	chr16:30906274-30973926	Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
20	esv3489432	chr16:30912801-30914799	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
21	esv3489433	chr16:30912801-30914799	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30912600-30915800	Flanking Active TSS	Dnd41	blood
2	chr16:30912800-30916400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr16:30913000-30914800	Active TSS	Brain Germinal Matrix	brain
4	chr16:30913200-30914800	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr16:30913200-30915400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr16:30913400-30914800	Active TSS	Rectal Smooth Muscle	rectum
7	chr16:30913400-30915800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr16:30913600-30932800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr16:30913800-30915400	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr16:30914000-30914800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr16:30914000-30914800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr16:30914000-30914800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr16:30914000-30915400	Enhancers	NHEK	skin
14	chr16:30914000-30916200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr16:30914000-30916200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr16:30914000-30916400	Enhancers	Spleen	Spleen
17	chr16:30914000-30916400	Enhancers	HUVEC	blood vessel
18	chr16:30914000-30921400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr16:30914000-30933200	Weak transcription	Ovary	ovary
20	chr16:30914200-30914800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr16:30914200-30914800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr16:30914200-30914800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr16:30914200-30914800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr16:30914200-30914800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr16:30914200-30914800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr16:30914200-30914800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr16:30914200-30914800	Enhancers	Esophagus	oesophagus
28	chr16:30914200-30914800	Enhancers	Fetal Intestine Small	intestine
29	chr16:30914200-30914800	Enhancers	Pancreas	Pancrea
30	chr16:30914200-30914800	Enhancers	NH-A	brain
31	chr16:30914200-30915000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr16:30914200-30915000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr16:30914200-30915200	Enhancers	Right Atrium	heart
34	chr16:30914200-30915200	Enhancers	NHLF	lung
35	chr16:30914200-30915600	Weak transcription	Brain Hippocampus Middle	brain
36	chr16:30914200-30915600	Enhancers	Fetal Stomach	stomach
37	chr16:30914200-30915800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr16:30914200-30915800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr16:30914200-30915800	Enhancers	Brain Cingulate Gyrus	brain
40	chr16:30914200-30915800	Enhancers	HepG2	liver
41	chr16:30914200-30916000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr16:30914200-30916000	Enhancers	Left Ventricle	heart
43	chr16:30914200-30916000	Enhancers	Right Ventricle	heart
44	chr16:30914200-30916000	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr16:30914200-30916000	Enhancers	GM12878-XiMat	blood
46	chr16:30914200-30916200	Enhancers	Gastric	stomach
47	chr16:30914200-30916400	Enhancers	Placenta	Placenta
48	chr16:30914200-30916600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr16:30914200-30916600	Enhancers	Fetal Muscle Trunk	muscle
50	chr16:30914200-30917400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links