Variant report

Variant	rs9929927
Chromosome Location	chr16:30952646-30952647
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:30949285..30950813-chr16:30951543..30953681,2	MCF-7	breast:
2	chr16:30932570..30935399-chr16:30951570..30953747,3	MCF-7	breast:
3	chr16:30944040..30946636-chr16:30950248..30953294,3	MCF-7	breast:
4	chr16:30785880..30788115-chr16:30951936..30953609,2	K562	blood:
5	chr16:30933307..30935477-chr16:30950285..30953255,3	K562	blood:
6	chr16:30937201..30939265-chr16:30951650..30953553,2	K562	blood:
7	chr16:30946645..30949568-chr16:30950712..30953448,2	MCF-7	breast:
8	chr16:30885110..30887739-chr16:30951914..30954479,2	MCF-7	breast:
9	chr16:30952173..30954212-chr16:31190131..31192878,2	MCF-7	breast:
10	chr16:30951026..30955016-chr16:30956656..30961515,9	MCF-7	breast:
11	chr16:30931099..30935683-chr16:30951173..30955369,5	MCF-7	breast:
12	chr16:30932667..30934937-chr16:30952381..30954780,2	K562	blood:
13	chr16:30945199..30947042-chr16:30951080..30953694,2	K562	blood:
14	chr16:30757305..30759426-chr16:30951863..30953472,2	MCF-7	breast:
15	chr16:30951689..30954966-chr16:30957894..30961243,5	MCF-7	breast:
16	chr16:30952502..30953482-chr16:30968748..30969670,2	MCF-7	breast:
17	chr16:30952078..30954988-chr16:30967257..30969018,2	MCF-7	breast:
18	chr16:30668996..30671162-chr16:30951713..30953470,2	K562	blood:
19	chr16:30951150..30953261-chr16:31724418..31726544,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260083	Chromatin interaction
ENSG00000099381	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000156860	Chromatin interaction
ENSG00000197302	Chromatin interaction
ENSG00000099364	Chromatin interaction
ENSG00000175938	Chromatin interaction
ENSG00000261487	Chromatin interaction
ENSG00000260852	Chromatin interaction
ENSG00000265991	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12102485	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13333418	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1870292	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28572417	1.00[EUR][1000 genomes]
rs34212827	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4405566	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7184263	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526635	1.00[EUR][1000 genomes]
rs73526645	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8048593	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8050229	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8055067	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8061920	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8062731	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9940894	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
4	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
5	esv1825223	chr16:30669091-30971810	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
6	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
7	nsv905733	chr16:30796919-31004812	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
8	nsv833189	chr16:30819708-30960795	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
9	nsv833190	chr16:30845051-31007863	Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
10	nsv833191	chr16:30864242-31048051	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	115 gene(s)	inside rSNPs	diseases
11	nsv905734	chr16:30877544-31191482	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
12	nsv905735	chr16:30890538-31247924	Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	264 gene(s)	inside rSNPs	diseases
13	nsv905736	chr16:30900235-30995528	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
14	nsv905737	chr16:30900235-31014179	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
15	nsv457483	chr16:30903679-31191482	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
16	nsv571820	chr16:30903679-31191482	Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
17	nsv905738	chr16:30906274-30973926	Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
18	esv1797877	chr16:30948643-31188432	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30936000-30953400	Weak transcription	Right Atrium	heart
2	chr16:30936400-30955200	Weak transcription	Fetal Kidney	kidney
3	chr16:30936400-30955800	Weak transcription	Small Intestine	intestine
4	chr16:30936600-30952800	Weak transcription	Hela-S3	cervix
5	chr16:30936600-30953000	Weak transcription	Stomach Mucosa	stomach
6	chr16:30937600-30958600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr16:30937800-30953000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr16:30938200-30953000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr16:30939200-30953000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr16:30939400-30958800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr16:30939600-30959000	Strong transcription	Brain Germinal Matrix	brain
12	chr16:30940000-30953000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr16:30942400-30953200	Weak transcription	Colonic Mucosa	Colon
14	chr16:30942400-30959600	Weak transcription	Psoas Muscle	Psoas
15	chr16:30942800-30953000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr16:30943800-30952800	Weak transcription	Brain Angular Gyrus	brain
17	chr16:30943800-30955000	Weak transcription	Fetal Brain Male	brain
18	chr16:30944000-30952800	Strong transcription	Fetal Intestine Small	intestine
19	chr16:30944000-30953000	Weak transcription	Colon Smooth Muscle	Colon
20	chr16:30944000-30953000	Weak transcription	NHDF-Ad	bronchial
21	chr16:30944000-30953200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr16:30944000-30953400	Weak transcription	Liver	Liver
23	chr16:30944200-30953200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr16:30944200-30955600	Weak transcription	Aorta	Aorta
25	chr16:30944400-30953400	Weak transcription	Left Ventricle	heart
26	chr16:30944400-30955000	Weak transcription	Primary T cells from cord blood	blood
27	chr16:30944600-30953000	Weak transcription	Adipose Nuclei	Adipose
28	chr16:30946400-30953000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr16:30946400-30953000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr16:30946600-30953000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr16:30946600-30953000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr16:30946600-30953000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr16:30947000-30952800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr16:30947000-30953000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr16:30947000-30953000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr16:30947000-30953200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr16:30947600-30952800	Weak transcription	Brain Substantia Nigra	brain
38	chr16:30947600-30953000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr16:30947600-30953200	Weak transcription	Pancreas	Pancrea
40	chr16:30947800-30953000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr16:30947800-30953200	Weak transcription	Thymus	Thymus
42	chr16:30947800-30959400	Weak transcription	Ovary	ovary
43	chr16:30948800-30953000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr16:30948800-30953400	Weak transcription	Lung	lung
45	chr16:30949000-30953200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr16:30949200-30952800	Weak transcription	Brain Anterior Caudate	brain
47	chr16:30949200-30952800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr16:30949200-30953000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr16:30949200-30953000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr16:30949200-30953000	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links