Variant report

Variant	rs9940894
Chromosome Location	chr16:30962021-30962022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:30793404..30794954-chr16:30961534..30963272,2	K562	blood:
2	chr16:30670452..30672304-chr16:30960476..30962244,2	MCF-7	breast:
3	chr16:30959582..30963121-chr16:31518179..31521498,3	K562	blood:
4	chr16:30886216..30887952-chr16:30961810..30964409,2	MCF-7	breast:
5	chr16:30960287..30962281-chr16:31451872..31454552,2	MCF-7	breast:
6	chr16:30959935..30962843-chr16:31083365..31086256,4	MCF-7	breast:
7	chr16:30960093..30962910-chr16:31117078..31118783,2	K562	blood:
8	chr16:30960242..30962054-chr16:31106031..31107586,2	K562	blood:
9	chr16:30770838..30772695-chr16:30960014..30962052,2	K562	blood:
10	chr16:30931619..30936181-chr16:30955998..30963201,14	K562	blood:
11	chr16:30947459..30949066-chr16:30961227..30963883,2	MCF-7	breast:
12	chr16:30960007..30962579-chr16:31723261..31726293,3	MCF-7	breast:
13	chr16:30933979..30936655-chr16:30960385..30962981,2	MCF-7	breast:
14	chr16:30958395..30965480-chr16:31189619..31195213,11	K562	blood:
15	chr16:30958732..30963097-chr16:31189619..31195213,8	K562	blood:
16	chr16:30960482..30963722-chr16:31009124..31011668,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196118	Chromatin interaction
ENSG00000261731	Chromatin interaction
ENSG00000140688	Chromatin interaction
ENSG00000260083	Chromatin interaction
ENSG00000260852	Chromatin interaction
ENSG00000103507	Chromatin interaction
ENSG00000260625	Chromatin interaction
ENSG00000197302	Chromatin interaction
ENSG00000099364	Chromatin interaction
ENSG00000255439	Chromatin interaction
ENSG00000156860	Chromatin interaction
ENSG00000167394	Chromatin interaction
ENSG00000176723	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000167397	Chromatin interaction
ENSG00000260304	Chromatin interaction
ENSG00000167395	Chromatin interaction
ENSG00000265991	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12102485	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13333418	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1870292	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2077633	1.00[MEX][hapmap]
rs28572417	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34212827	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4405566	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7184263	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203711	0.82[ASW][hapmap];1.00[MEX][hapmap];0.81[YRI][hapmap]
rs73526635	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526645	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8048593	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8050229	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8055067	0.84[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8061920	0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8062731	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9929927	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9932822	0.80[AFR][1000 genomes]
rs9932921	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
4	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
5	esv1825223	chr16:30669091-30971810	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
6	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
7	nsv905733	chr16:30796919-31004812	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
8	nsv833190	chr16:30845051-31007863	Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
9	nsv833191	chr16:30864242-31048051	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	115 gene(s)	inside rSNPs	diseases
10	nsv905734	chr16:30877544-31191482	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
11	nsv905735	chr16:30890538-31247924	Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	264 gene(s)	inside rSNPs	diseases
12	nsv905736	chr16:30900235-30995528	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
13	nsv905737	chr16:30900235-31014179	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
14	nsv457483	chr16:30903679-31191482	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
15	nsv571820	chr16:30903679-31191482	Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
16	nsv905738	chr16:30906274-30973926	Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
17	esv1797877	chr16:30948643-31188432	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
18	nsv482192	chr16:30960405-30966258	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	38 gene(s)	inside rSNPs	n/a
19	nsv833193	chr16:30960796-31133604	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30958000-30962200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr16:30959800-30962400	Flanking Active TSS	Primary hematopoietic stem cells	blood
3	chr16:30960000-30962200	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr16:30960200-30963200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr16:30960800-30962200	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr16:30960800-30962400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr16:30960800-30962400	Enhancers	Dnd41	blood
8	chr16:30961000-30962200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
9	chr16:30961000-30962200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr16:30961000-30962200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr16:30961000-30962200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr16:30961000-30962200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr16:30961000-30962200	Flanking Active TSS	Hela-S3	cervix
14	chr16:30961000-30962200	Flanking Active TSS	NHEK	skin
15	chr16:30961000-30962200	Flanking Active TSS	NHLF	lung
16	chr16:30961000-30962200	Flanking Active TSS	Osteobl	bone
17	chr16:30961000-30962400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr16:30961000-30962400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr16:30961000-30962400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr16:30961000-30962400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr16:30961000-30962400	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr16:30961000-30962400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
23	chr16:30961000-30962600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr16:30961000-30962600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr16:30961000-30962600	Flanking Active TSS	Liver	Liver
26	chr16:30961200-30962200	Flanking Active TSS	Thymus	Thymus
27	chr16:30961200-30962400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr16:30961200-30962400	Flanking Active TSS	HMEC	breast
29	chr16:30961200-30962800	Enhancers	Fetal Heart	heart
30	chr16:30961400-30962400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr16:30961600-30962200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr16:30961600-30962200	Enhancers	Brain Angular Gyrus	brain
33	chr16:30961600-30962200	Enhancers	Psoas Muscle	Psoas
34	chr16:30961600-30962200	Flanking Active TSS	GM12878-XiMat	blood
35	chr16:30961600-30962200	Flanking Active TSS	NHDF-Ad	bronchial
36	chr16:30961600-30962400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr16:30961600-30962400	Enhancers	Placenta Amnion	Placenta Amnion
38	chr16:30961600-30962400	Enhancers	Right Ventricle	heart
39	chr16:30961600-30962400	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr16:30961600-30962600	Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr16:30961600-30962600	Enhancers	Left Ventricle	heart
42	chr16:30961600-30962800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr16:30961600-30963000	Enhancers	Esophagus	oesophagus
44	chr16:30961600-30963000	Enhancers	Gastric	stomach
45	chr16:30961600-30963000	Enhancers	Lung	lung
46	chr16:30961600-30963000	Enhancers	Ovary	ovary
47	chr16:30961600-30963600	Enhancers	Fetal Brain Male	brain
48	chr16:30961800-30962200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr16:30961800-30962200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr16:30961800-30962200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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