Variant report

Variant	rs806220
Chromosome Location	chr7:127242494-127242495
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1090681	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1090682	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1090683	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs698406	0.82[AMR][1000 genomes]
rs712697	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs712698	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs712699	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs712700	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs712701	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs712703	0.80[AMR][1000 genomes]
rs806192	0.82[ASN][1000 genomes]
rs806193	0.83[AMR][1000 genomes]
rs806195	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs806196	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs806215	0.82[AMR][1000 genomes]
rs806218	0.83[AMR][1000 genomes]
rs806219	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127232000-127243200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:127232000-127245600	Weak transcription	Aorta	Aorta
3	chr7:127232200-127248200	Weak transcription	Spleen	Spleen
4	chr7:127233200-127244000	Weak transcription	Left Ventricle	heart
5	chr7:127233400-127243000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:127233800-127243000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:127241400-127248000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:127241800-127243400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links