Variant report

Variant	rs806215
Chromosome Location	chr7:127237312-127237313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1090681	0.84[AMR][1000 genomes]
rs1090682	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1090683	0.86[EUR][1000 genomes]
rs2073561	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs327510	0.95[CEU][hapmap];0.80[CHB][hapmap];0.89[EUR][1000 genomes]
rs327511	0.89[EUR][1000 genomes]
rs327512	0.95[CEU][hapmap];0.81[CHB][hapmap];0.89[EUR][1000 genomes]
rs327516	0.95[CEU][hapmap];0.81[CHB][hapmap];0.90[EUR][1000 genomes]
rs327521	0.88[EUR][1000 genomes]
rs3735642	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3735644	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3757793	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs594141	0.94[EUR][1000 genomes]
rs67719649	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs698406	1.00[CEU][hapmap];0.95[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs712697	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs712698	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs712699	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs712700	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs712701	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs712703	1.00[CEU][hapmap];0.91[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs712704	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72607743	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs806192	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs806193	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs806195	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs806196	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs806214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs806216	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs806218	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs806219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs806220	0.82[AMR][1000 genomes]
rs806221	0.85[EUR][1000 genomes]
rs989099	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs989100	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127229600-127241000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:127229800-127237400	Weak transcription	Right Atrium	heart
3	chr7:127231600-127241000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:127232000-127238200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:127232000-127240600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:127232000-127240600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:127232000-127240800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:127232000-127243200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:127232000-127245600	Weak transcription	Aorta	Aorta
10	chr7:127232200-127237600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:127232200-127238200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:127232200-127240000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:127232200-127240800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:127232200-127241000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:127232200-127241000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:127232200-127241600	Weak transcription	Adipose Nuclei	Adipose
17	chr7:127232200-127248200	Weak transcription	Spleen	Spleen
18	chr7:127232400-127240400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr7:127232800-127240800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:127233200-127244000	Weak transcription	Left Ventricle	heart
21	chr7:127233400-127243000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:127233800-127243000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr7:127236000-127241000	Weak transcription	Pancreas	Pancrea
24	chr7:127237000-127238400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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