Variant report

Variant	rs327516
Chromosome Location	chr7:127255795-127255796
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr7:127255753-127256051	HEK293-T-REx	kidney:	n/a	n/a

Variant related genes	Relation type
PAX4	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1090682	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1090683	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2073561	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs2582717	0.90[CHB][hapmap]
rs327510	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs327511	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs327512	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs327521	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3735642	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs3735644	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs3757793	0.83[EUR][1000 genomes]
rs594141	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67719649	0.81[EUR][1000 genomes]
rs698406	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs712697	0.95[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs712698	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs712699	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs712700	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs712701	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs712703	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs712704	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs712707	0.81[CHB][hapmap]
rs712719	0.85[CHB][hapmap]
rs806172	0.85[CHB][hapmap]
rs806175	0.90[CHB][hapmap]
rs806180	0.80[CHB][hapmap]
rs806188	0.91[CHB][hapmap]
rs806192	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs806193	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs806195	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs806196	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs806214	0.95[CEU][hapmap];0.80[CHB][hapmap];0.90[EUR][1000 genomes]
rs806215	0.95[CEU][hapmap];0.81[CHB][hapmap];0.90[EUR][1000 genomes]
rs806216	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs806218	0.91[EUR][1000 genomes]
rs806219	0.95[CEU][hapmap];0.80[CHB][hapmap];0.91[EUR][1000 genomes]
rs806221	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs989099	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs989100	0.95[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127249800-127259600	Weak transcription	Pancreas	Pancrea
2	chr7:127255000-127255800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr7:127255200-127255800	Bivalent Enhancer	Placenta	Placenta
4	chr7:127255200-127256000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:127255600-127255800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
6	chr7:127255600-127255800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:127255600-127255800	Bivalent Enhancer	Brain Germinal Matrix	brain

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