Variant report

Variant	rs1090683
Chromosome Location	chr7:127245881-127245882
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127234161..127236523-chr7:127245499..127248332,3	K562	blood:

Variant related genes	Relation type
ENSG00000106328	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1090681	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1090682	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2073561	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs327510	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs327511	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs327512	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs327516	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs327521	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3735642	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3735644	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3757793	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs594141	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67719649	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs698406	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs712697	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs712698	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs712699	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs712700	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs712701	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs712703	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs712704	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72607743	0.81[AMR][1000 genomes]
rs806192	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs806193	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs806195	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs806196	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs806214	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs806215	0.86[EUR][1000 genomes]
rs806216	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs806218	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs806219	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs806220	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs806221	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs989099	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs989100	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127232200-127248200	Weak transcription	Spleen	Spleen
2	chr7:127241400-127248000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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