Variant report

Variant	rs8062543
Chromosome Location	chr16:69833086-69833087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69833036..69834030-chr16:69971100..69971839,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11860750	0.89[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap]
rs11860910	1.00[AFR][1000 genomes]
rs11861500	0.89[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap]
rs11864225	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs11864406	0.89[YRI][hapmap]
rs6499236	0.88[YRI][hapmap]
rs6499242	0.89[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap]
rs6499245	0.89[ASW][hapmap];0.88[LWK][hapmap];0.89[YRI][hapmap]
rs6499261	0.86[AFR][1000 genomes]
rs689459	0.89[YRI][hapmap]
rs7185430	0.89[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap]
rs7190711	0.89[YRI][hapmap]
rs7194157	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7195995	0.80[YRI][hapmap]
rs8045428	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8046469	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8047010	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8047310	0.89[YRI][hapmap]
rs8047888	1.00[MKK][hapmap]
rs8052959	1.00[AFR][1000 genomes]
rs8057106	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8057650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8058029	1.00[AMR][1000 genomes]
rs8058669	0.94[YRI][hapmap];0.80[AFR][1000 genomes]
rs8059162	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs8059310	0.89[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap]
rs8059311	0.89[YRI][hapmap]
rs8060916	1.00[AFR][1000 genomes]
rs8062809	0.84[YRI][hapmap];0.91[AFR][1000 genomes]
rs875011	1.00[MKK][hapmap]
rs9746717	0.89[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap]
rs9921129	0.89[ASW][hapmap];0.88[LWK][hapmap];0.89[YRI][hapmap]
rs9935492	0.81[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69797600-69853400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr16:69807200-69852400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:69807200-69852800	Weak transcription	Hela-S3	cervix
4	chr16:69807200-69854800	Weak transcription	Psoas Muscle	Psoas
5	chr16:69808000-69833200	Weak transcription	HSMM	muscle
6	chr16:69810000-69839800	Weak transcription	HUVEC	blood vessel
7	chr16:69810200-69833400	Weak transcription	Dnd41	blood
8	chr16:69815200-69833400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr16:69817800-69854600	Weak transcription	HMEC	breast
10	chr16:69820200-69845000	Weak transcription	K562	blood
11	chr16:69822400-69854800	Weak transcription	Stomach Mucosa	stomach
12	chr16:69822600-69833200	Weak transcription	Small Intestine	intestine
13	chr16:69823800-69874800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr16:69824000-69833200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr16:69824200-69852400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr16:69827000-69833400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr16:69830000-69839000	Strong transcription	HepG2	liver
18	chr16:69830200-69856600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr16:69830600-69833200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr16:69830600-69833200	Weak transcription	Brain Germinal Matrix	brain
21	chr16:69830600-69833200	Weak transcription	Fetal Lung	lung
22	chr16:69830600-69833200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr16:69830600-69833800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr16:69830600-69838400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr16:69830600-69857600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr16:69830600-69864200	Weak transcription	Colon Smooth Muscle	Colon
27	chr16:69830600-69867000	Weak transcription	Right Ventricle	heart
28	chr16:69830800-69833200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr16:69830800-69833200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr16:69831000-69833200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr16:69831000-69845000	Weak transcription	Fetal Brain Male	brain
32	chr16:69831000-69845600	Weak transcription	A549	lung
33	chr16:69831000-69852400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr16:69831000-69852400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr16:69831000-69854800	Weak transcription	Aorta	Aorta
36	chr16:69831000-69856400	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr16:69831200-69833200	Weak transcription	NHDF-Ad	bronchial
38	chr16:69831200-69846200	Strong transcription	Fetal Intestine Small	intestine
39	chr16:69831600-69838800	Strong transcription	Duodenum Mucosa	Duodenum
40	chr16:69832000-69834200	Strong transcription	Primary B cells from cord blood	blood
41	chr16:69832000-69834400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
42	chr16:69832000-69834800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr16:69832000-69836800	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr16:69832000-69837800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr16:69832000-69838800	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr16:69832400-69833800	Enhancers	Osteobl	bone
47	chr16:69832400-69834000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr16:69832400-69834200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr16:69832400-69834200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr16:69832400-69835200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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