Variant report

Variant	rs9921129
Chromosome Location	chr16:69738727-69738728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:69734561..69737941-chr16:69738671..69742586,5	MCF-7	breast:
2	chr16:69709143..69710860-chr16:69736738..69738963,2	K562	blood:
3	chr16:69738078..69740268-chr16:69746571..69749474,3	K562	blood:

Variant related genes	Relation type
ENSG00000260772	Chromatin interaction
ENSG00000102908	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11859488	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11860750	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11861496	0.92[AFR][1000 genomes]
rs11861500	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11862202	0.86[AFR][1000 genomes]
rs11863013	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11864225	0.89[YRI][hapmap]
rs11864406	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11864525	0.92[AFR][1000 genomes]
rs11865019	0.92[AFR][1000 genomes]
rs11866304	0.80[AFR][1000 genomes]
rs13330277	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28525492	0.95[AFR][1000 genomes]
rs61730073	0.95[AFR][1000 genomes]
rs6499233	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs6499235	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6499236	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6499242	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6499245	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs689459	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7185263	0.95[AFR][1000 genomes]
rs7185430	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7186199	0.86[AFR][1000 genomes]
rs7187272	0.86[AFR][1000 genomes]
rs7188149	0.85[AFR][1000 genomes]
rs7190711	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7195974	0.83[AFR][1000 genomes]
rs7196193	0.92[AFR][1000 genomes]
rs7204285	0.92[AFR][1000 genomes]
rs8046469	0.89[ASW][hapmap];0.88[LWK][hapmap];0.84[YRI][hapmap]
rs8047010	0.89[ASW][hapmap];0.88[LWK][hapmap];0.89[YRI][hapmap]
rs8047310	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs8049055	0.92[AFR][1000 genomes]
rs8052967	0.92[AFR][1000 genomes]
rs8054678	0.92[AFR][1000 genomes]
rs8056135	0.92[AFR][1000 genomes]
rs8058514	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8058669	0.95[YRI][hapmap]
rs8059162	0.89[ASW][hapmap];0.88[LWK][hapmap];0.89[YRI][hapmap]
rs8059310	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs8059311	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs8059804	0.92[AFR][1000 genomes]
rs8060543	0.95[AFR][1000 genomes]
rs8062543	0.89[ASW][hapmap];0.88[LWK][hapmap];0.89[YRI][hapmap]
rs9674055	0.82[YRI][hapmap]
rs9746717	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906822	chr16:69711533-69745145	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	esv3396845	chr16:69721905-69770627	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69701800-69739200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr16:69708800-69739600	Strong transcription	Placenta	Placenta
3	chr16:69709000-69739400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr16:69709400-69755400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr16:69722600-69738800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr16:69722800-69739400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr16:69723800-69739200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr16:69726000-69755800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr16:69726600-69738800	Strong transcription	HSMM	muscle
10	chr16:69726600-69759800	Weak transcription	Psoas Muscle	Psoas
11	chr16:69726800-69739000	Strong transcription	GM12878-XiMat	blood
12	chr16:69726800-69747600	Weak transcription	Fetal Heart	heart
13	chr16:69728200-69746200	Weak transcription	Stomach Mucosa	stomach
14	chr16:69728200-69758600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr16:69728400-69740200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr16:69728400-69744200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr16:69728400-69748800	Weak transcription	Gastric	stomach
18	chr16:69728400-69759200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:69728600-69752000	Weak transcription	Fetal Brain Male	brain
20	chr16:69729200-69739800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr16:69729200-69745000	Weak transcription	Spleen	Spleen
22	chr16:69729400-69741400	Weak transcription	Lung	lung
23	chr16:69729400-69741600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr16:69729400-69743600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr16:69729400-69744800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr16:69729400-69745000	Weak transcription	Pancreas	Pancrea
27	chr16:69729400-69760000	Weak transcription	Brain Germinal Matrix	brain
28	chr16:69729400-69760000	Weak transcription	Ovary	ovary
29	chr16:69729600-69739200	Weak transcription	Fetal Intestine Small	intestine
30	chr16:69729600-69739200	Weak transcription	Fetal Stomach	stomach
31	chr16:69729600-69740800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr16:69729600-69745000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr16:69729800-69746200	Weak transcription	Aorta	Aorta
34	chr16:69729800-69746200	Weak transcription	Left Ventricle	heart
35	chr16:69729800-69748800	Weak transcription	Esophagus	oesophagus
36	chr16:69730000-69739400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr16:69730000-69740600	Weak transcription	Small Intestine	intestine
38	chr16:69730000-69743400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr16:69730000-69743400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr16:69730000-69743600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr16:69730000-69745200	Weak transcription	Thymus	Thymus
42	chr16:69730000-69745800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr16:69730000-69759000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr16:69730200-69742600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr16:69730200-69743400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr16:69730200-69743400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr16:69730200-69746000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr16:69730400-69740000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr16:69730400-69741800	Weak transcription	Brain Hippocampus Middle	brain
50	chr16:69730400-69744800	Weak transcription	Colonic Mucosa	Colon

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