Variant report

Variant	rs7195974
Chromosome Location	chr16:69591948-69591949
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:69563843..69566440-chr16:69590440..69592219,2	K562	blood:
2	chr16:69458413..69461284-chr16:69590262..69592868,2	MCF-7	breast:
3	chr16:69590898..69593139-chr16:69596176..69598406,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103018	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11859488	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11860750	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11861496	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11861500	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11862202	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11863013	0.86[AFR][1000 genomes]
rs11864406	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11864525	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11865019	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11866304	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13330277	0.92[AFR][1000 genomes]
rs16958889	1.00[AMR][1000 genomes]
rs16958892	1.00[AMR][1000 genomes]
rs28525492	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61730073	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499235	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499236	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499242	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499245	0.82[AFR][1000 genomes]
rs689459	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7185263	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7185430	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7186199	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7187272	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7188149	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7190711	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7196193	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7199248	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7204285	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7204339	1.00[AMR][1000 genomes]
rs74025775	1.00[AMR][1000 genomes]
rs8047310	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8049055	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8052967	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8053497	1.00[AMR][1000 genomes]
rs8054678	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8056135	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8058514	0.80[AFR][1000 genomes]
rs8058669	1.00[AMR][1000 genomes]
rs8059310	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8059311	1.00[AMR][1000 genomes]
rs8059804	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8060543	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8063483	1.00[AMR][1000 genomes]
rs9746717	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9921129	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1852	chr16:69566121-69610962	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69574600-69597800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:69589800-69592400	Weak transcription	GM12878-XiMat	blood
3	chr16:69589800-69596800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr16:69590000-69597800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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