Variant report

Variant	rs7199248
Chromosome Location	chr16:69583649-69583650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69582163..69584075-chr16:69593297..69595803,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11859488	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11860750	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11861496	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11861500	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11862202	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11863013	0.81[AFR][1000 genomes]
rs11864406	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11864525	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11865019	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11866304	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13330277	0.86[AFR][1000 genomes]
rs16958889	1.00[AMR][1000 genomes]
rs16958892	1.00[AMR][1000 genomes]
rs28525492	1.00[AMR][1000 genomes]
rs61730073	1.00[AMR][1000 genomes]
rs6499233	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499235	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499236	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499242	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs689459	1.00[AMR][1000 genomes]
rs7185263	1.00[AMR][1000 genomes]
rs7185430	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7186199	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7187272	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7188149	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7190711	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7195974	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7196193	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7204285	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7204339	1.00[AMR][1000 genomes]
rs74025775	1.00[AMR][1000 genomes]
rs8047310	1.00[AMR][1000 genomes]
rs8049055	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8052967	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8053497	1.00[AMR][1000 genomes]
rs8054678	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8056135	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8058669	1.00[AMR][1000 genomes]
rs8059310	1.00[AMR][1000 genomes]
rs8059311	1.00[AMR][1000 genomes]
rs8059804	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8060543	1.00[AMR][1000 genomes]
rs8063483	1.00[AMR][1000 genomes]
rs9746717	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1852	chr16:69566121-69610962	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69574600-69597800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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