Variant report

Variant	rs11865019
Chromosome Location	chr16:69684120-69684121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:69684113-69684158	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
NFAT5	TF binding region

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11859488	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11860750	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11861496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11861500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11862202	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11863013	0.95[AFR][1000 genomes]
rs11864406	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11864525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11866304	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13330277	0.89[AFR][1000 genomes]
rs16958889	1.00[AMR][1000 genomes]
rs16958892	1.00[AMR][1000 genomes]
rs28525492	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61730073	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499233	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499235	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499245	0.91[AFR][1000 genomes]
rs689459	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7185263	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7185430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7186199	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7187272	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7188149	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7190711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7195974	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7196193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7199248	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7204285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7204339	1.00[AMR][1000 genomes]
rs74025775	1.00[AMR][1000 genomes]
rs8047310	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8049055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8052967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8053497	1.00[AMR][1000 genomes]
rs8054678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8056135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8058514	0.89[AFR][1000 genomes]
rs8058669	1.00[AMR][1000 genomes]
rs8059310	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8059311	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8059804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8060543	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8063483	1.00[AMR][1000 genomes]
rs9746717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9921129	0.92[AFR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69647600-69705000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr16:69653600-69689600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr16:69654200-69703600	Weak transcription	Brain Angular Gyrus	brain
4	chr16:69654200-69705600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr16:69654600-69705000	Weak transcription	Psoas Muscle	Psoas
6	chr16:69660400-69709600	Weak transcription	Fetal Brain Male	brain
7	chr16:69667000-69727600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr16:69670600-69689200	Weak transcription	Brain Germinal Matrix	brain
9	chr16:69670800-69689600	Weak transcription	Esophagus	oesophagus
10	chr16:69670800-69715400	Weak transcription	Aorta	Aorta
11	chr16:69671200-69689600	Weak transcription	Spleen	Spleen
12	chr16:69671200-69726400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr16:69671400-69689400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr16:69674400-69684800	Weak transcription	Fetal Heart	heart
15	chr16:69674600-69685000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr16:69678800-69705600	Weak transcription	Stomach Mucosa	stomach
17	chr16:69679400-69690400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr16:69680400-69699000	Strong transcription	Placenta	Placenta
19	chr16:69680400-69699200	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr16:69680600-69684800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr16:69680600-69691000	Strong transcription	HMEC	breast
22	chr16:69680600-69691000	Strong transcription	HUVEC	blood vessel
23	chr16:69680600-69699200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr16:69680800-69685200	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr16:69680800-69685200	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr16:69680800-69685400	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr16:69680800-69685600	Strong transcription	Hela-S3	cervix
28	chr16:69680800-69685800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr16:69680800-69690800	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr16:69680800-69691000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr16:69680800-69691000	Strong transcription	HepG2	liver
32	chr16:69680800-69691200	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr16:69680800-69691200	Strong transcription	HSMM	muscle
34	chr16:69680800-69691400	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr16:69680800-69691400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr16:69680800-69694400	Strong transcription	Fetal Lung	lung
37	chr16:69680800-69695800	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr16:69680800-69698600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr16:69680800-69699000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr16:69680800-69699200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr16:69680800-69699200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr16:69680800-69699200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr16:69680800-69699200	Strong transcription	Liver	Liver
44	chr16:69681000-69684400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr16:69681000-69685400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr16:69681000-69685600	Strong transcription	NHDF-Ad	bronchial
47	chr16:69681000-69685800	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr16:69681000-69691400	Strong transcription	Osteobl	bone
49	chr16:69681000-69697200	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr16:69681000-69699200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links