Variant report

Variant	rs74025775
Chromosome Location	chr16:69484818-69484819
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69484387..69486263-chr16:69486438..69488255,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11859488	1.00[AMR][1000 genomes]
rs11860750	1.00[AMR][1000 genomes]
rs11861496	1.00[AMR][1000 genomes]
rs11861500	1.00[AMR][1000 genomes]
rs11862202	1.00[AMR][1000 genomes]
rs11864406	1.00[AMR][1000 genomes]
rs11864525	1.00[AMR][1000 genomes]
rs11865019	1.00[AMR][1000 genomes]
rs11866304	1.00[AMR][1000 genomes]
rs16958889	1.00[AMR][1000 genomes]
rs16958892	1.00[AMR][1000 genomes]
rs28525492	1.00[AMR][1000 genomes]
rs56735557	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6499233	1.00[AMR][1000 genomes]
rs6499235	1.00[AMR][1000 genomes]
rs6499236	1.00[AMR][1000 genomes]
rs6499242	1.00[AMR][1000 genomes]
rs7185430	1.00[AMR][1000 genomes]
rs7186199	1.00[AMR][1000 genomes]
rs7187272	1.00[AMR][1000 genomes]
rs7188149	1.00[AMR][1000 genomes]
rs7190711	1.00[AMR][1000 genomes]
rs7195974	1.00[AMR][1000 genomes]
rs7196193	1.00[AMR][1000 genomes]
rs7199248	1.00[AMR][1000 genomes]
rs7204285	1.00[AMR][1000 genomes]
rs74025780	0.91[AFR][1000 genomes]
rs8047310	1.00[AMR][1000 genomes]
rs8049055	1.00[AMR][1000 genomes]
rs8052967	1.00[AMR][1000 genomes]
rs8054678	1.00[AMR][1000 genomes]
rs8056135	1.00[AMR][1000 genomes]
rs8059310	1.00[AMR][1000 genomes]
rs8059804	1.00[AMR][1000 genomes]
rs8060543	1.00[AMR][1000 genomes]
rs9746717	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064808	chr16:69271190-69552951	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv542940	chr16:69271190-69552951	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv431514	chr16:69428599-69581699	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69459400-69500600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:69459600-69499000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr16:69466200-69496600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr16:69467000-69486000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr16:69467000-69486200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr16:69470600-69492400	Weak transcription	Fetal Intestine Large	intestine
7	chr16:69473400-69501600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr16:69473800-69499600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr16:69478200-69497800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr16:69478400-69485200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr16:69478400-69496400	Weak transcription	Gastric	stomach
12	chr16:69478400-69498400	Weak transcription	Colonic Mucosa	Colon
13	chr16:69478400-69503200	Weak transcription	Spleen	Spleen
14	chr16:69478600-69489000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr16:69479000-69497000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr16:69479200-69493000	Weak transcription	NH-A	brain
17	chr16:69479200-69497600	Weak transcription	Brain Angular Gyrus	brain
18	chr16:69479200-69501400	Weak transcription	Aorta	Aorta
19	chr16:69479400-69489000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr16:69479400-69497400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr16:69479400-69497800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr16:69479400-69498800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr16:69479400-69503600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr16:69479600-69517600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr16:69479800-69505000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr16:69480400-69485200	Genic enhancers	A549	lung
27	chr16:69480400-69485400	Strong transcription	Dnd41	blood
28	chr16:69480600-69485400	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr16:69480600-69485400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr16:69480600-69485400	Strong transcription	Primary B cells from cord blood	blood
31	chr16:69480600-69485800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr16:69480600-69486800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr16:69480600-69486800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr16:69480600-69494600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr16:69480600-69497000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr16:69480600-69501200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr16:69480800-69485400	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr16:69480800-69485400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr16:69480800-69485400	Strong transcription	K562	blood
40	chr16:69480800-69486000	Strong transcription	HMEC	breast
41	chr16:69480800-69486200	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr16:69480800-69486600	Strong transcription	Fetal Thymus	thymus
43	chr16:69481000-69486800	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr16:69481200-69498800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr16:69481400-69485400	Strong transcription	Primary hematopoietic stem cells	blood
46	chr16:69481400-69488800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr16:69481400-69495600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr16:69481400-69503800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr16:69481600-69485400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr16:69481600-69488400	Strong transcription	Primary T helper cells fromperipheralblood	blood

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