Variant report

Variant	rs9674055
Chromosome Location	chr16:69560725-69560726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69560207..69562252-chr16:69564012..69565719,2	MCF-7	breast:
2	chr16:69559754..69561359-chr16:69598364..69600533,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223109	Chromatin interaction
ENSG00000102908	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11860750	0.82[YRI][hapmap]
rs11861500	0.82[YRI][hapmap]
rs13330995	1.00[AMR][1000 genomes]
rs13332880	1.00[AMR][1000 genomes]
rs13336357	1.00[AMR][1000 genomes]
rs13339493	1.00[AMR][1000 genomes]
rs28402794	1.00[AMR][1000 genomes]
rs28502677	1.00[AMR][1000 genomes]
rs28514573	1.00[AMR][1000 genomes]
rs28523536	1.00[AMR][1000 genomes]
rs28535427	1.00[AMR][1000 genomes]
rs28607148	1.00[AMR][1000 genomes]
rs28628240	1.00[AMR][1000 genomes]
rs6499233	0.82[YRI][hapmap]
rs6499235	0.82[YRI][hapmap]
rs6499242	0.82[YRI][hapmap]
rs6499245	0.82[YRI][hapmap]
rs7185430	0.82[YRI][hapmap]
rs7196281	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7196801	1.00[AMR][1000 genomes]
rs74025780	1.00[AMR][1000 genomes]
rs8049348	1.00[AMR][1000 genomes]
rs8059310	0.82[YRI][hapmap]
rs9746717	0.82[YRI][hapmap]
rs9921129	0.82[YRI][hapmap]
rs9921301	1.00[AMR][1000 genomes]
rs9923096	1.00[AMR][1000 genomes]
rs9924073	1.00[AMR][1000 genomes]
rs9924364	1.00[AMR][1000 genomes]
rs9925245	1.00[AMR][1000 genomes]
rs9926382	1.00[AMR][1000 genomes]
rs9926822	1.00[AMR][1000 genomes]
rs9932104	1.00[AMR][1000 genomes]
rs9933583	1.00[AMR][1000 genomes]
rs9936451	1.00[AMR][1000 genomes]
rs9937762	1.00[AMR][1000 genomes]
rs9938552	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431514	chr16:69428599-69581699	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv906821	chr16:69509506-69576894	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69548200-69563000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr16:69549600-69563200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr16:69552400-69563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr16:69555400-69561000	Weak transcription	A549	lung
5	chr16:69555600-69562600	Weak transcription	Hela-S3	cervix
6	chr16:69555800-69560800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr16:69555800-69561200	Weak transcription	HSMM	muscle
8	chr16:69555800-69563200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr16:69555800-69563600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr16:69556200-69563000	Weak transcription	NHEK	skin
11	chr16:69556200-69563200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr16:69556200-69563600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr16:69556400-69560800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr16:69556800-69563200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr16:69558000-69562400	Weak transcription	Placenta	Placenta
16	chr16:69558400-69560800	Weak transcription	HepG2	liver
17	chr16:69558600-69563600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr16:69560000-69561000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr16:69560000-69561400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr16:69560400-69561200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr16:69560600-69561600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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