Variant report

Variant	rs9924364
Chromosome Location	chr16:69616608-69616609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69597897..69602848-chr16:69610469..69616831,7	MCF-7	breast:
2	chr16:69615958..69618176-chr16:69618325..69620737,2	K562	blood:

Variant related genes	Relation type
ENSG00000223109	Chromatin interaction
ENSG00000102908	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13330995	1.00[AMR][1000 genomes]
rs13332880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13336357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13339493	1.00[AMR][1000 genomes]
rs28402794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28502677	1.00[AMR][1000 genomes]
rs28514573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28523536	1.00[AMR][1000 genomes]
rs28535427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28607148	1.00[AMR][1000 genomes]
rs28610117	1.00[AMR][1000 genomes]
rs28628240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7196281	1.00[AMR][1000 genomes]
rs7196801	1.00[AMR][1000 genomes]
rs74025780	1.00[AMR][1000 genomes]
rs8049348	1.00[AMR][1000 genomes]
rs9674055	1.00[AMR][1000 genomes]
rs9921301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9923096	1.00[AMR][1000 genomes]
rs9924073	1.00[AMR][1000 genomes]
rs9925245	1.00[AMR][1000 genomes]
rs9926382	1.00[AMR][1000 genomes]
rs9926822	1.00[AMR][1000 genomes]
rs9930692	1.00[AMR][1000 genomes]
rs9931479	1.00[AMR][1000 genomes]
rs9932104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9933583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9936451	1.00[AMR][1000 genomes]
rs9937762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9938552	1.00[AMR][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69602000-69633000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr16:69602200-69619400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr16:69602200-69622000	Weak transcription	Gastric	stomach
4	chr16:69602200-69627000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr16:69602200-69628600	Weak transcription	Right Atrium	heart
6	chr16:69602200-69631600	Weak transcription	Pancreas	Pancrea
7	chr16:69602200-69643200	Weak transcription	Fetal Muscle Leg	muscle
8	chr16:69602200-69646600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr16:69602200-69653600	Weak transcription	Fetal Thymus	thymus
10	chr16:69602600-69628600	Weak transcription	Thymus	Thymus
11	chr16:69602600-69628800	Weak transcription	Right Ventricle	heart
12	chr16:69602600-69629600	Weak transcription	HSMMtube	muscle
13	chr16:69602600-69630200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr16:69602600-69630800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr16:69602800-69627800	Weak transcription	Fetal Kidney	kidney
16	chr16:69602800-69629200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr16:69603000-69617400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr16:69603000-69627800	Weak transcription	Brain Substantia Nigra	brain
19	chr16:69603000-69647400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr16:69603200-69627800	Weak transcription	Primary B cells from cord blood	blood
21	chr16:69603200-69629600	Weak transcription	NH-A	brain
22	chr16:69603400-69617200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr16:69603400-69623600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr16:69603600-69619400	Weak transcription	K562	blood
25	chr16:69603600-69625200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr16:69603600-69627000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr16:69603600-69629200	Weak transcription	HUVEC	blood vessel
28	chr16:69603600-69660000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr16:69604000-69620000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr16:69604000-69627800	Weak transcription	Fetal Lung	lung
31	chr16:69604000-69628000	Weak transcription	Primary T cells from cord blood	blood
32	chr16:69604000-69629000	Weak transcription	NHLF	lung
33	chr16:69604400-69619200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr16:69605400-69619400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr16:69605400-69629200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr16:69605400-69663200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr16:69605600-69660600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr16:69609000-69617200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr16:69609600-69627400	Weak transcription	Fetal Intestine Large	intestine
40	chr16:69610000-69623400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr16:69610600-69629200	Weak transcription	Aorta	Aorta
42	chr16:69610800-69618200	Weak transcription	Placenta	Placenta
43	chr16:69610800-69618400	Weak transcription	Lung	lung
44	chr16:69610800-69619600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr16:69610800-69621200	Weak transcription	Ovary	ovary
46	chr16:69610800-69623200	Weak transcription	Psoas Muscle	Psoas
47	chr16:69610800-69628600	Weak transcription	Left Ventricle	heart
48	chr16:69610800-69630800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr16:69610800-69642000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr16:69611000-69628000	Weak transcription	Brain Angular Gyrus	brain

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