Variant report

Variant	rs9936451
Chromosome Location	chr16:69796887-69796888
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:69784937..69786887-chr16:69796034..69797734,2	MCF-7	breast:
2	chr16:69776041..69778310-chr16:69796566..69798633,2	MCF-7	breast:
3	chr16:69787313..69790862-chr16:69792512..69798249,7	K562	blood:
4	chr16:69755811..69761889-chr16:69791851..69798633,14	K562	blood:
5	chr16:69794502..69797651-chr16:69808679..69811582,3	MCF-7	breast:
6	chr16:69787301..69791461-chr16:69794716..69798365,9	K562	blood:
7	chr16:69743672..69747154-chr16:69795617..69797836,3	MCF-7	breast:
8	chr16:69759185..69761889-chr16:69795379..69799385,4	K562	blood:
9	chr16:69795573..69798488-chr16:69807022..69810242,5	K562	blood:
10	chr16:69791707..69793215-chr16:69794706..69797155,2	K562	blood:
11	chr16:69795431..69797350-chr16:69819161..69821145,2	MCF-7	breast:
12	chr16:69796345..69798404-chr16:69804172..69806496,2	MCF-7	breast:
13	chr16:69757858..69760516-chr16:69796168..69797980,2	MCF-7	breast:
14	chr16:69785030..69792317-chr16:69794435..69797821,11	MCF-7	breast:
15	chr16:69740285..69743443-chr16:69794568..69797700,3	MCF-7	breast:
16	chr16:69796024..69797928-chr16:69813694..69816439,2	MCF-7	breast:
17	chr16:69795982..69798244-chr16:69969705..69971242,2	K562	blood:
18	chr16:69760067..69762510-chr16:69795079..69797612,5	MCF-7	breast:
19	chr16:69794457..69798184-chr16:69807022..69810693,5	K562	blood:
20	chr16:69796609..69799065-chr16:69804390..69806464,2	K562	blood:
21	chr16:69795308..69797439-chr16:70322057..70323697,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000262136	Chromatin interaction
ENSG00000181019	Chromatin interaction
ENSG00000261602	Chromatin interaction
ENSG00000260290	Chromatin interaction
ENSG00000252443	Chromatin interaction
ENSG00000090861	Chromatin interaction
ENSG00000157349	Chromatin interaction
ENSG00000141101	Chromatin interaction
ENSG00000252670	Chromatin interaction
ENSG00000198373	Chromatin interaction
ENSG00000238683	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs13329778	1.00[AMR][1000 genomes]
rs13329812	1.00[AMR][1000 genomes]
rs13330995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13332544	1.00[AMR][1000 genomes]
rs13332880	1.00[AMR][1000 genomes]
rs13336041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13336357	1.00[AMR][1000 genomes]
rs13338911	1.00[AMR][1000 genomes]
rs13339493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28402794	1.00[AMR][1000 genomes]
rs28429826	1.00[AMR][1000 genomes]
rs28502677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28514573	1.00[AMR][1000 genomes]
rs28523536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28535427	1.00[AMR][1000 genomes]
rs28576892	1.00[AMR][1000 genomes]
rs28583989	1.00[AMR][1000 genomes]
rs28607148	1.00[AMR][1000 genomes]
rs28610117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28628240	1.00[AMR][1000 genomes]
rs28651196	1.00[AMR][1000 genomes]
rs28673794	1.00[AMR][1000 genomes]
rs28756357	1.00[AMR][1000 genomes]
rs28803823	1.00[AMR][1000 genomes]
rs28867427	1.00[AMR][1000 genomes]
rs28882509	1.00[AMR][1000 genomes]
rs9674055	1.00[AMR][1000 genomes]
rs9921301	1.00[AMR][1000 genomes]
rs9923096	1.00[AMR][1000 genomes]
rs9923471	1.00[AMR][1000 genomes]
rs9924073	1.00[AMR][1000 genomes]
rs9924364	1.00[AMR][1000 genomes]
rs9924630	1.00[AMR][1000 genomes]
rs9925245	1.00[AMR][1000 genomes]
rs9926382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9926822	1.00[AMR][1000 genomes]
rs9928560	1.00[AMR][1000 genomes]
rs9930692	1.00[AMR][1000 genomes]
rs9931479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9932104	1.00[AMR][1000 genomes]
rs9933583	1.00[AMR][1000 genomes]
rs9933606	1.00[AMR][1000 genomes]
rs9933745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9935697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9935973	1.00[AMR][1000 genomes]
rs9937762	1.00[AMR][1000 genomes]
rs9938552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv524364	chr16:69745145-69803443	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69795600-69797000	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr16:69795600-69797000	Active TSS	Fetal Lung	lung
3	chr16:69795600-69797000	Active TSS	Rectal Smooth Muscle	rectum
4	chr16:69795600-69797200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr16:69795600-69797200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr16:69795600-69797200	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr16:69795600-69797200	Active TSS	Fetal Kidney	kidney
8	chr16:69795600-69797200	Active TSS	NHLF	lung
9	chr16:69795600-69797400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr16:69795600-69797400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr16:69795600-69797600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr16:69795600-69797600	Active TSS	Right Atrium	heart
13	chr16:69795600-69797800	Active TSS	Colonic Mucosa	Colon
14	chr16:69795800-69797000	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr16:69795800-69797000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr16:69795800-69797000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr16:69795800-69797000	Active TSS	Brain Angular Gyrus	brain
18	chr16:69795800-69797000	Active TSS	Fetal Stomach	stomach
19	chr16:69795800-69797000	Active TSS	Placenta Amnion	Placenta Amnion
20	chr16:69795800-69797000	Active TSS	HSMMtube	muscle
21	chr16:69795800-69797200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr16:69795800-69797200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr16:69795800-69797200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr16:69795800-69797200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr16:69795800-69797200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr16:69795800-69797200	Active TSS	Aorta	Aorta
27	chr16:69795800-69797200	Active TSS	Esophagus	oesophagus
28	chr16:69795800-69797200	Active TSS	Fetal Muscle Trunk	muscle
29	chr16:69795800-69797200	Active TSS	Right Ventricle	heart
30	chr16:69795800-69797200	Active TSS	GM12878-XiMat	blood
31	chr16:69795800-69797400	Active TSS	H9 Cell Line	embryonic stem cell
32	chr16:69795800-69797400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr16:69795800-69797400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr16:69795800-69797400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
35	chr16:69795800-69797400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr16:69795800-69797400	Active TSS	Fetal Muscle Leg	muscle
37	chr16:69795800-69797400	Active TSS	Left Ventricle	heart
38	chr16:69795800-69797400	Active TSS	Ovary	ovary
39	chr16:69795800-69797400	Active TSS	HSMM	muscle
40	chr16:69795800-69797400	Active TSS	NHDF-Ad	bronchial
41	chr16:69795800-69797600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr16:69795800-69797600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr16:69795800-69797600	Active TSS	Psoas Muscle	Psoas
44	chr16:69795800-69797800	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr16:69795800-69798000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr16:69796000-69797000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr16:69796000-69797000	Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr16:69796000-69797000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr16:69796000-69797000	Active TSS	Brain Cingulate Gyrus	brain
50	chr16:69796000-69797000	Active TSS	Brain Hippocampus Middle	brain

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