Variant report

Variant	rs9933606
Chromosome Location	chr16:69943714-69943715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs13329778	1.00[AMR][1000 genomes]
rs13329812	1.00[AMR][1000 genomes]
rs13330995	1.00[AMR][1000 genomes]
rs13332544	1.00[AMR][1000 genomes]
rs13336041	1.00[AMR][1000 genomes]
rs13336357	1.00[AMR][1000 genomes]
rs13338911	1.00[AMR][1000 genomes]
rs13339493	1.00[AMR][1000 genomes]
rs28429826	1.00[AMR][1000 genomes]
rs28502677	1.00[AMR][1000 genomes]
rs28523536	1.00[AMR][1000 genomes]
rs28576892	1.00[AMR][1000 genomes]
rs28583989	1.00[AMR][1000 genomes]
rs28610117	1.00[AMR][1000 genomes]
rs28628240	1.00[AMR][1000 genomes]
rs28651196	1.00[AMR][1000 genomes]
rs28673794	1.00[AMR][1000 genomes]
rs28756357	1.00[AMR][1000 genomes]
rs28803823	1.00[AMR][1000 genomes]
rs28867427	1.00[AMR][1000 genomes]
rs28882509	1.00[AMR][1000 genomes]
rs3972068	1.00[AMR][1000 genomes]
rs7200890	1.00[AMR][1000 genomes]
rs9923471	1.00[AMR][1000 genomes]
rs9924073	1.00[AMR][1000 genomes]
rs9924630	1.00[AMR][1000 genomes]
rs9926382	1.00[AMR][1000 genomes]
rs9928560	1.00[AMR][1000 genomes]
rs9930692	1.00[AMR][1000 genomes]
rs9931479	1.00[AMR][1000 genomes]
rs9933583	1.00[AMR][1000 genomes]
rs9933745	1.00[AMR][1000 genomes]
rs9935697	1.00[AMR][1000 genomes]
rs9935973	1.00[AMR][1000 genomes]
rs9936451	1.00[AMR][1000 genomes]
rs9938552	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1062171	chr16:69854267-70188585	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv542941	chr16:69854267-70188585	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1059249	chr16:69854467-70188446	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
5	nsv542942	chr16:69854467-70188446	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
6	esv2758428	chr16:69855122-70313222	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	esv2758652	chr16:69855122-70313222	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69904200-69951200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr16:69911400-69970200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr16:69913600-69950400	Weak transcription	A549	lung
4	chr16:69923600-69944800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr16:69923800-69949200	Weak transcription	Dnd41	blood
6	chr16:69923800-69951800	Weak transcription	GM12878-XiMat	blood
7	chr16:69924400-69965000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr16:69925400-69951200	Weak transcription	Fetal Kidney	kidney
9	chr16:69927400-69950200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr16:69929600-69944600	Weak transcription	Gastric	stomach
11	chr16:69930800-69944600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr16:69934800-69946600	Strong transcription	Primary T cells from cord blood	blood
13	chr16:69934800-69946800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr16:69934800-69946800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr16:69935200-69946000	Strong transcription	Primary B cells from cord blood	blood
16	chr16:69935200-69955000	Weak transcription	Colon Smooth Muscle	Colon
17	chr16:69935400-69951000	Weak transcription	Hela-S3	cervix
18	chr16:69938800-69951400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr16:69939000-69944400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr16:69939000-69946800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr16:69939000-69974000	Weak transcription	Fetal Brain Male	brain
22	chr16:69939200-69945800	Strong transcription	Duodenum Mucosa	Duodenum
23	chr16:69939400-69945000	Weak transcription	K562	blood
24	chr16:69939400-69951200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr16:69939400-69951200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr16:69939600-69967600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr16:69939800-69951200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr16:69940400-69946000	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr16:69940400-69958800	Weak transcription	Right Atrium	heart
30	chr16:69940800-69955000	Weak transcription	Psoas Muscle	Psoas
31	chr16:69941000-69945600	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr16:69941000-69945800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr16:69941000-69946400	Strong transcription	Primary B cells from peripheral blood	blood
34	chr16:69941200-69946400	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr16:69941400-69945200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr16:69941400-69951000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr16:69941400-69951200	Weak transcription	Osteobl	bone
38	chr16:69941600-69944600	Weak transcription	NHDF-Ad	bronchial
39	chr16:69941600-69946000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr16:69941600-69950400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr16:69941600-69951000	Weak transcription	HSMMtube	muscle
42	chr16:69941600-69951200	Weak transcription	HSMM	muscle
43	chr16:69941800-69946400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr16:69941800-69950600	Weak transcription	NHLF	lung
45	chr16:69941800-69951000	Weak transcription	HUVEC	blood vessel
46	chr16:69942200-69945400	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr16:69942200-69946000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr16:69942200-69946000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr16:69942200-69946400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr16:69942400-69943800	Strong transcription	Fetal Muscle Trunk	muscle

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