The 2.0 version of rSNPBase

Variant report

Variant rs28882509
Chromosome Location chr16:69899098-69899099
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:69834000-69910600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr16:69837000-69905600 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr16:69874000-69905800 Weak transcription Placenta Amnion Placenta Amnion
4 chr16:69876000-69904400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr16:69876000-69905800 Weak transcription Dnd41 blood
6 chr16:69876200-69905800 Weak transcription Brain Germinal Matrix brain
7 chr16:69883000-69899400 Weak transcription NHLF lung
8 chr16:69883400-69899600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr16:69883400-69903800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr16:69883600-69904400 Weak transcription HMEC breast
11 chr16:69887600-69901400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr16:69888000-69901400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
13 chr16:69888000-69905600 Weak transcription Gastric stomach
14 chr16:69889200-69899800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr16:69889600-69905600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr16:69890400-69923400 Weak transcription HUVEC blood vessel
17 chr16:69892600-69905400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
18 chr16:69893000-69906800 Weak transcription GM12878-XiMat blood
19 chr16:69893000-69907000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
20 chr16:69893000-69934800 Weak transcription Hela-S3 cervix
21 chr16:69893200-69899600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr16:69893200-69901000 Weak transcription Primary T helper naive cells fromperipheralblood blood
23 chr16:69893200-69901000 Weak transcription Fetal Thymus thymus
24 chr16:69893200-69901200 Weak transcription Primary T helper naive cells from peripheral blood blood
25 chr16:69893200-69901400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr16:69893200-69903800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr16:69893200-69904600 Weak transcription NHEK skin
28 chr16:69893200-69906400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr16:69893200-69923000 Weak transcription Primary T killer memory cells from peripheral blood blood
30 chr16:69893400-69899400 Weak transcription Primary T helper cells PMA-I stimulated --
31 chr16:69893400-69901200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
32 chr16:69893400-69905000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
33 chr16:69893400-69906400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr16:69893600-69905600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
35 chr16:69893600-69910600 Weak transcription A549 lung
36 chr16:69894200-69899600 Weak transcription Placenta Placenta
37 chr16:69894200-69903800 Weak transcription Primary T cells fromperipheralblood blood
38 chr16:69894600-69901000 Weak transcription Thymus Thymus
39 chr16:69895200-69901000 Weak transcription Primary B cells from peripheral blood blood
40 chr16:69895200-69901000 Weak transcription Primary T regulatory cells fromperipheralblood blood
41 chr16:69895200-69901200 Weak transcription Esophagus oesophagus
42 chr16:69895200-69901200 Weak transcription Spleen Spleen
43 chr16:69895200-69905600 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr16:69895400-69899600 Weak transcription Primary neutrophils fromperipheralblood blood
45 chr16:69895400-69901000 Weak transcription Fetal Intestine Large intestine
46 chr16:69895400-69905600 Weak transcription Aorta Aorta
47 chr16:69895600-69900600 Enhancers Fetal Heart heart
48 chr16:69895600-69900800 Weak transcription Primary T helper cells fromperipheralblood blood
49 chr16:69895600-69906200 Weak transcription Fetal Brain Female brain
50 chr16:69895800-69907000 Weak transcription Small Intestine intestine

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Last update: Aug 31, 2015