Variant report

Variant	rs9937762
Chromosome Location	chr16:69719980-69719981
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69718628..69722517-chr16:69722736..69727715,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102908	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs13329778	1.00[AMR][1000 genomes]
rs13329812	1.00[AMR][1000 genomes]
rs13330995	1.00[AMR][1000 genomes]
rs13332544	1.00[AMR][1000 genomes]
rs13332880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13336041	1.00[AMR][1000 genomes]
rs13336357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13339493	1.00[AMR][1000 genomes]
rs28402794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28429826	1.00[AMR][1000 genomes]
rs28502677	1.00[AMR][1000 genomes]
rs28514573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28523536	1.00[AMR][1000 genomes]
rs28535427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28576892	1.00[AMR][1000 genomes]
rs28583989	1.00[AMR][1000 genomes]
rs28607148	1.00[AMR][1000 genomes]
rs28610117	1.00[AMR][1000 genomes]
rs28628240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28651196	1.00[AMR][1000 genomes]
rs28673794	1.00[AMR][1000 genomes]
rs28756357	1.00[AMR][1000 genomes]
rs28803823	1.00[AMR][1000 genomes]
rs28867427	1.00[AMR][1000 genomes]
rs28882509	1.00[AMR][1000 genomes]
rs7196281	1.00[AMR][1000 genomes]
rs7196801	1.00[AMR][1000 genomes]
rs74025780	1.00[AMR][1000 genomes]
rs8049348	1.00[AMR][1000 genomes]
rs9674055	1.00[AMR][1000 genomes]
rs9921301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9923096	1.00[AMR][1000 genomes]
rs9923471	1.00[AMR][1000 genomes]
rs9924073	1.00[AMR][1000 genomes]
rs9924364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9924630	1.00[AMR][1000 genomes]
rs9925245	1.00[AMR][1000 genomes]
rs9926382	1.00[AMR][1000 genomes]
rs9926822	1.00[AMR][1000 genomes]
rs9928560	1.00[AMR][1000 genomes]
rs9930692	1.00[AMR][1000 genomes]
rs9931479	1.00[AMR][1000 genomes]
rs9932104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9933583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9933745	1.00[AMR][1000 genomes]
rs9935697	1.00[AMR][1000 genomes]
rs9935973	1.00[AMR][1000 genomes]
rs9936451	1.00[AMR][1000 genomes]
rs9938552	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906822	chr16:69711533-69745145	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69667000-69727600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:69671200-69726400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr16:69681600-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:69681600-69725800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr16:69685000-69724800	Weak transcription	Fetal Heart	heart
6	chr16:69688600-69725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr16:69690200-69725800	Weak transcription	Ovary	ovary
8	chr16:69691000-69726400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr16:69694800-69725800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr16:69700400-69725400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr16:69701400-69725600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr16:69701800-69739200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr16:69704000-69725400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr16:69704600-69737800	Strong transcription	Liver	Liver
15	chr16:69705800-69725800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr16:69705800-69725800	Weak transcription	Gastric	stomach
17	chr16:69705800-69725800	Weak transcription	Small Intestine	intestine
18	chr16:69705800-69726000	Weak transcription	Psoas Muscle	Psoas
19	chr16:69706000-69725000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr16:69706000-69726200	Weak transcription	Stomach Mucosa	stomach
21	chr16:69706200-69725800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr16:69706200-69725800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr16:69706200-69725800	Weak transcription	Right Ventricle	heart
24	chr16:69706400-69725800	Weak transcription	Brain Angular Gyrus	brain
25	chr16:69708800-69739600	Strong transcription	Placenta	Placenta
26	chr16:69709000-69739400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr16:69709200-69720600	Strong transcription	Primary T cells from cord blood	blood
28	chr16:69709400-69720400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr16:69709400-69721600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr16:69709400-69755400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr16:69709600-69720800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr16:69709600-69721200	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr16:69709600-69723600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr16:69709600-69724600	Strong transcription	Fetal Intestine Large	intestine
35	chr16:69709600-69726800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr16:69709800-69721600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr16:69709800-69737000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr16:69710000-69721600	Strong transcription	Fetal Lung	lung
39	chr16:69710000-69737400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr16:69710800-69732000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr16:69711600-69723800	Strong transcription	Fetal Stomach	stomach
42	chr16:69711600-69723800	Weak transcription	K562	blood
43	chr16:69711600-69725600	Weak transcription	Fetal Brain Male	brain
44	chr16:69711800-69723000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr16:69711800-69723800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr16:69711800-69723800	Strong transcription	Fetal Intestine Small	intestine
47	chr16:69712800-69723800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr16:69712800-69725800	Weak transcription	Brain Germinal Matrix	brain
49	chr16:69712800-69725800	Weak transcription	Brain Substantia Nigra	brain
50	chr16:69713000-69724800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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