Variant report

Variant	rs8066348
Chromosome Location	chr17:59488398-59488399
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr17:59488260-59488410	MCF-7	breast:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
2	SIN3AK20	chr17:59486979-59489165	SK-N-SH	brain:	n/a	n/a
3	CTCF	chr17:59488260-59488410	GM12871	blood:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
4	CTCF	chr17:59488260-59488410	HFF-Myc	foreskin:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
5	MEF2A	chr17:59485767-59490640	SK-N-SH	brain:	n/a	chr17:59489068-59489076
6	CTCF	chr17:59488300-59488450	HFF-Myc	foreskin:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
7	CTCF	chr17:59488260-59488410	K562	blood:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
8	CTCF	chr17:59488260-59488410	HUVEC	blood vessel:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
9	CTCF	chr17:59488211-59488428	GM10248	blood:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
10	BACH1	chr17:59488044-59488460	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTCF	chr17:59488209-59488444	Pancreas_OC	pancreas:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
12	ZNF143	chr17:59488142-59490296	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr17:59488210-59488445	GM12891	blood:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
14	CTCF	chr17:59488280-59488430	GM12864	blood:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
15	TCF7L2	chr17:59487998-59489013	HCT-116	colon:	n/a	n/a
16	RAD21	chr17:59487656-59491474	SK-N-SH	brain:	n/a	chr17:59488343-59488353 chr17:59488338-59488357 chr17:59491210-59491220 chr17:59488536-59488550 chr17:59488875-59488884 chr17:59488341-59488354 chr17:59487989-59487999 chr17:59488343-59488355
17	YY1	chr17:59488145-59488443	GM12892	blood:	n/a	chr17:59488369-59488380 chr17:59488423-59488437 chr17:59488424-59488438
18	CTCF	chr17:59488260-59488410	HMF	breast:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
19	SUZ12	chr17:59486777-59488445	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr17:59488180-59488449	T-47D	breast:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
21	MAZ	chr17:59488235-59488461	GM12878	blood:	n/a	n/a
22	PBX3	chr17:59487113-59488862	SK-N-SH	brain:	n/a	n/a
23	TEAD4	chr17:59484276-59495088	A549	lung:	n/a	n/a
24	TEAD4	chr17:59487963-59490539	SK-N-SH	brain:	n/a	n/a
25	CTCF	chr17:59488211-59488448	Fibrobl	skin:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
26	CTCF	chr17:59488260-59488410	AoAF	blood vessel:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
27	CTCF	chr17:59488260-59488410	NHDF-neo	bronchial:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
28	CTCF	chr17:59488320-59488470	NB4	blood:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
29	CTCF	chr17:59488260-59488410	GM12872	blood:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
30	CTCF	chr17:59488300-59488450	NHLF	lung:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
31	CTCF	chr17:59488260-59488410	GM12865	blood:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
32	CTCF	chr17:59488260-59488410	GM12866	blood:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
33	CTCF	chr17:59488202-59488420	SK-N-SH_RA	brain:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
34	CTCF	chr17:59488209-59488451	Lung_OC	lung:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
35	CTCF	chr17:59488171-59488476	GM19240	blood:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
36	CTCF	chr17:59488260-59488410	HAc	cerebellar:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
37	RAD21	chr17:59488158-59488454	SK-N-SH_RA	brain:	n/a	chr17:59488343-59488353 chr17:59488338-59488357 chr17:59488341-59488354 chr17:59488343-59488355
38	CTCF	chr17:59488217-59488422	HUVEC	blood vessel:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
39	CTCF	chr17:59488202-59488418	SK-N-SH_RA	brain:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
40	RAD21	chr17:59488087-59488459	H1-hESC	embryonic stem cell:	n/a	chr17:59488343-59488353 chr17:59488338-59488357 chr17:59488341-59488354 chr17:59488343-59488355
41	POLR2A	chr17:59488190-59488495	HUVEC	blood vessel:	n/a	n/a
42	CTCF	chr17:59488178-59488448	GM12878	blood:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
43	YY1	chr17:59488126-59488478	H1-hESC	embryonic stem cell:	n/a	chr17:59488369-59488380 chr17:59488423-59488437 chr17:59488424-59488438
44	CTCF	chr17:59488260-59488410	HVMF	connective:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
45	CTCF	chr17:59488221-59488420	Gliobla	brain:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
46	CTCF	chr17:59488221-59488420	GM13976	blood:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
47	CTCF	chr17:59488280-59488430	BE2_C	brain:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
48	CTCF	chr17:59488280-59488430	GM12873	blood:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
49	CTCF	chr17:59488210-59488450	GM13977	blood:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352
50	CTCF	chr17:59488260-59488410	SAEC	small airway:	n/a	chr17:59488340-59488353 chr17:59488339-59488360 chr17:59488337-59488355 chr17:59488342-59488352

No.	Distal block	Cell Line	Cell type
1	chr17:59488009..59490784-chr17:78119613..78122104,2	MCF-7	breast:
2	chr17:59470525..59474011-chr17:59486288..59490375,89	MCF-7	breast:
3	chr17:59487822..59491370-chr20:49345755..49351152,8	MCF-7	breast:
4	chr17:59486475..59488762-chr20:45887507..45889647,2	MCF-7	breast:
5	chr17:57064353..57067451-chr17:59486567..59489337,3	MCF-7	breast:
6	chr17:59415713..59496229-chr20:49401322..49431802,760	MCF-7	breast:
7	chr17:59079366..59079901-chr17:59488032..59488748,2	MCF-7	breast:
8	chr17:59488147..59491206-chr17:73773645..73776030,4	MCF-7	breast:
9	chr16:85588910..85591052-chr17:59486534..59488510,2	MCF-7	breast:
10	chr17:59487742..59490467-chr20:52208536..52212416,5	MCF-7	breast:
11	chr17:59488387..59491331-chr17:73367342..73369969,2	MCF-7	breast:
12	chr12:14922167..14924156-chr17:59485855..59488624,2	MCF-7	breast:
13	chr17:59486721..59489555-chr19:54973484..54975427,2	MCF-7	breast:
14	chr17:59485117..59489801-chr22:29195073..29197990,4	MCF-7	breast:
15	chr1:41155776..41157819-chr17:59487564..59490052,2	MCF-7	breast:
16	chr17:59485603..59490421-chr20:49409438..49412592,198	MCF-7	breast:
17	chr17:57076071..57077783-chr17:59486729..59488516,2	MCF-7	breast:
18	chr17:59487230..59489642-chr5:6632867..6634401,2	MCF-7	breast:
19	chr17:59487144..59488865-chr3:64487071..64489605,2	MCF-7	breast:
20	chr17:59487872..59488837-chr17:59628277..59629342,5	MCF-7	breast:
21	chr1:219876789..219878405-chr17:59486605..59488633,2	MCF-7	breast:
22	chr17:59487584..59490320-chr17:60003961..60006356,2	MCF-7	breast:
23	chr14:38063644..38065305-chr17:59487657..59489465,2	MCF-7	breast:
24	chr17:59486098..59489964-chr20:45947329..45951517,6	MCF-7	breast:
25	chr17:59488052..59488861-chr17:59628476..59629187,2	MCF-7	breast:
26	chr17:59488344..59489973-chr17:73719352..73722145,2	MCF-7	breast:
27	chr17:59079471..59082667-chr17:59485930..59489124,3	MCF-7	breast:
28	chr17:59486789..59493376-chr20:46130669..46135131,5	MCF-7	breast:
29	chr17:59485646..59489353-chr20:52553682..52557868,4	MCF-7	breast:
30	chr17:59486878..59488888-chr20:52405963..52408731,2	MCF-7	breast:
31	chr17:59486940..59488565-chr20:49345606..49347486,2	MCF-7	breast:
32	chr17:59488351..59489947-chr8:101320286..101322497,2	MCF-7	breast:
33	chr1:112496709..112499673-chr17:59486931..59488454,2	MCF-7	breast:
34	chr17:59487737..59488821-chr17:59651765..59652893,4	MCF-7	breast:
35	chr1:112489519..112492004-chr17:59487264..59488851,2	MCF-7	breast:
36	chr1:121483602..121485397-chr17:59486737..59488712,2	MCF-7	breast:
37	chr17:59487879..59490260-chr20:55840268..55844036,3	MCF-7	breast:
38	chr17:59487495..59490414-chr2:220361426..220363256,2	MCF-7	breast:
39	chr17:59486762..59488545-chr20:49347784..49350072,2	MCF-7	breast:
40	chr17:57861160..57863240-chr17:59486550..59489513,2	MCF-7	breast:
41	chr1:152018576..152021368-chr17:59488179..59489785,2	MCF-7	breast:
42	chr17:59477427..59479626-chr17:59488065..59490134,11	MCF-7	breast:
43	chr17:59476401..59478732-chr17:59488339..59490282,10	MCF-7	breast:
44	chr17:59486998..59489266-chr20:45978277..45980916,2	MCF-7	breast:
45	chr15:51570778..51573248-chr17:59486536..59489007,2	MCF-7	breast:
46	chr17:59488148..59489737-chr7:158619933..158622291,2	MCF-7	breast:
47	chr1:153584110..153586999-chr17:59487265..59488769,2	MCF-7	breast:
48	chr17:59487467..59489683-chr20:55680392..55683930,3	MCF-7	breast:
49	chr17:56734938..56737169-chr17:59487119..59490178,3	MCF-7	breast:
50	chr1:112527808..112533804-chr17:59487383..59491538,7	MCF-7	breast:

Variant related genes	Relation type
C17orf82	TF binding region
ENSG00000216168	Chromatin interaction
ENSG00000212694	Chromatin interaction
ENSG00000089157	Chromatin interaction
ENSG00000117868	Chromatin interaction
ENSG00000108506	Chromatin interaction
ENSG00000267801	Chromatin interaction
ENSG00000236352	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000072195	Chromatin interaction
ENSG00000171940	Chromatin interaction
ENSG00000188643	Chromatin interaction
ENSG00000108423	Chromatin interaction
ENSG00000008513	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000259701	Chromatin interaction
ENSG00000201524	Chromatin interaction
ENSG00000034677	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000136492	Chromatin interaction
ENSG00000141543	Chromatin interaction
ENSG00000136603	Chromatin interaction
ENSG00000124171	Chromatin interaction
ENSG00000108443	Chromatin interaction
ENSG00000231128	Chromatin interaction
ENSG00000085433	Chromatin interaction
ENSG00000066136	Chromatin interaction
ENSG00000267131	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000132475	Chromatin interaction
ENSG00000206652	Chromatin interaction
ENSG00000081019	Chromatin interaction
ENSG00000139725	Chromatin interaction
ENSG00000231078	Chromatin interaction
ENSG00000182909	Chromatin interaction
ENSG00000267637	Chromatin interaction
ENSG00000129514	Chromatin interaction
ENSG00000103326	Chromatin interaction
ENSG00000206573	Chromatin interaction
ENSG00000268603	Chromatin interaction
ENSG00000168137	Chromatin interaction
ENSG00000139865	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000226308	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000272145	Chromatin interaction
ENSG00000124243	Chromatin interaction
ENSG00000226471	Chromatin interaction
ENSG00000163191	Chromatin interaction
ENSG00000145545	Chromatin interaction
ENSG00000124151	Chromatin interaction
ENSG00000108479	Chromatin interaction
ENSG00000101040	Chromatin interaction
ENSG00000037474	Chromatin interaction
ENSG00000141376	Chromatin interaction
ENSG00000197837	Chromatin interaction
ENSG00000100219	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000171385	Chromatin interaction
ENSG00000132470	Chromatin interaction
ENSG00000155130	Chromatin interaction
ENSG00000231437	Chromatin interaction
ENSG00000132481	Chromatin interaction
ENSG00000264853	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1076393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1132179	0.84[EUR][1000 genomes]
rs12451524	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286524	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3744449	0.96[EUR][1000 genomes]
rs3760369	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4455026	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59051236	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7208889	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7214900	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs729782	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740753	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs740754	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8075606	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8078820	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8080990	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065939	chr17:59283350-59517730	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	331 gene(s)	inside rSNPs	diseases
2	nsv833505	chr17:59323466-59518007	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	326 gene(s)	inside rSNPs	diseases
3	nsv833506	chr17:59362377-59562984	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
4	nsv518130	chr17:59456589-59491281	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	265 gene(s)	inside rSNPs	diseases
5	esv1796927	chr17:59460119-59495319	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	270 gene(s)	inside rSNPs	diseases
6	nsv908663	chr17:59464069-59521310	Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	278 gene(s)	inside rSNPs	diseases
7	nsv908664	chr17:59465697-59491030	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	261 gene(s)	inside rSNPs	diseases
8	nsv908665	chr17:59470193-59494574	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	264 gene(s)	inside rSNPs	diseases
9	nsv908666	chr17:59470842-59489822	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	253 gene(s)	inside rSNPs	diseases
10	nsv908667	chr17:59471151-59491030	Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	256 gene(s)	inside rSNPs	diseases
11	nsv908668	chr17:59471151-59494574	Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	263 gene(s)	inside rSNPs	diseases
12	nsv908669	chr17:59471372-59491030	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	255 gene(s)	inside rSNPs	diseases
13	nsv908670	chr17:59471372-59494574	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	262 gene(s)	inside rSNPs	diseases
14	nsv908671	chr17:59475888-59494574	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	255 gene(s)	inside rSNPs	diseases
15	nsv908672	chr17:59476062-59494574	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	255 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59485400-59488600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
2	chr17:59485800-59489000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
3	chr17:59486200-59489800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr17:59486400-59490600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr17:59486400-59490800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr17:59486600-59488400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
7	chr17:59486600-59489200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
8	chr17:59486600-59491000	Active TSS	Aorta	Aorta
9	chr17:59487000-59488400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
10	chr17:59487000-59488600	Enhancers	Pancreas	Pancrea
11	chr17:59487000-59488600	Enhancers	Spleen	Spleen
12	chr17:59487000-59488800	Bivalent Enhancer	HUVEC	blood vessel
13	chr17:59487000-59489400	Weak transcription	K562	blood
14	chr17:59487000-59489800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
15	chr17:59487200-59488400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr17:59487200-59488400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
17	chr17:59487200-59489400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
18	chr17:59487400-59488400	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
19	chr17:59487400-59488400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr17:59487400-59488400	Flanking Bivalent TSS/Enh	Placenta	Placenta
21	chr17:59487400-59488800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr17:59487400-59489000	Bivalent Enhancer	Fetal Thymus	thymus
23	chr17:59487400-59489000	Bivalent Enhancer	GM12878-XiMat	blood
24	chr17:59487400-59490400	Bivalent Enhancer	Fetal Brain Male	brain
25	chr17:59487600-59488400	Flanking Active TSS	Brain Substantia Nigra	brain
26	chr17:59487600-59488600	Enhancers	Lung	lung
27	chr17:59487600-59488800	Weak transcription	A549	lung
28	chr17:59487600-59488800	Weak transcription	HMEC	breast
29	chr17:59487600-59488800	Weak transcription	HSMM	muscle
30	chr17:59487600-59489000	Weak transcription	Hela-S3	cervix
31	chr17:59487600-59489400	Weak transcription	HepG2	liver
32	chr17:59487600-59490800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
33	chr17:59487800-59488400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr17:59487800-59488400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr17:59487800-59488400	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
36	chr17:59487800-59488400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
37	chr17:59487800-59488400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
38	chr17:59487800-59489200	Bivalent/Poised TSS	Psoas Muscle	Psoas
39	chr17:59487800-59489800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
40	chr17:59487800-59489800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
41	chr17:59487800-59489800	Active TSS	Right Atrium	heart
42	chr17:59487800-59490400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr17:59487800-59490600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
44	chr17:59487800-59490600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
45	chr17:59487800-59490800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
46	chr17:59488000-59488400	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr17:59488000-59488400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr17:59488000-59488400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
49	chr17:59488000-59488400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
50	chr17:59488000-59488600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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