Variant report

Variant	rs8068177
Chromosome Location	chr17:17288339-17288340
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17288032..17290457-chr17:17396061..17397654,2	MCF-7	breast:
2	chr16:89626780..89628627-chr17:17287230..17288747,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167526	Chromatin interaction
ENSG00000200084	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs60327070	0.86[EUR][1000 genomes]
rs6502590	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7222345	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7223785	0.82[EUR][1000 genomes]
rs73286419	0.86[EUR][1000 genomes]
rs73286451	0.82[EUR][1000 genomes]
rs9909266	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17281000-17288600	Weak transcription	Fetal Lung	lung
2	chr17:17281600-17290600	Weak transcription	Esophagus	oesophagus
3	chr17:17284200-17290000	Weak transcription	Pancreas	Pancrea
4	chr17:17285400-17288400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr17:17285400-17288800	Weak transcription	Brain Angular Gyrus	brain
6	chr17:17285600-17288400	Weak transcription	Brain Hippocampus Middle	brain
7	chr17:17285800-17288400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr17:17285800-17288800	Weak transcription	Brain Anterior Caudate	brain
9	chr17:17285800-17290800	Weak transcription	Hela-S3	cervix
10	chr17:17286000-17288400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr17:17286000-17289000	Weak transcription	Fetal Intestine Small	intestine
12	chr17:17287200-17289800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:17287200-17289800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr17:17287400-17288400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr17:17287400-17288600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr17:17287400-17289000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr17:17287400-17289600	Enhancers	Fetal Brain Female	brain
18	chr17:17287600-17288400	Weak transcription	Fetal Brain Male	brain
19	chr17:17287600-17289400	Bivalent Enhancer	Fetal Stomach	stomach
20	chr17:17287600-17292400	Enhancers	Fetal Muscle Leg	muscle
21	chr17:17287600-17292600	Enhancers	Fetal Muscle Trunk	muscle
22	chr17:17287800-17290600	Enhancers	Brain Germinal Matrix	brain
23	chr17:17288000-17288400	Bivalent Enhancer	Placenta	Placenta
24	chr17:17288200-17288400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
25	chr17:17288200-17289800	Enhancers	Brain Substantia Nigra	brain

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