Variant report

Variant	rs7223785
Chromosome Location	chr17:17292479-17292480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17258537..17261520-chr17:17290146..17293123,2	MCF-7	breast:
2	chr17:17278849..17281558-chr17:17290486..17292840,2	K562	blood:
3	chr17:17290388..17293287-chr17:17293294..17295342,3	MCF-7	breast:
4	chr17:17290050..17292751-chr17:17397207..17401029,5	MCF-7	breast:
5	chr17:17290703..17292981-chr17:17343527..17346178,2	MCF-7	breast:
6	chr17:17258751..17260211-chr17:17291478..17292805,6	MCF-7	breast:
7	chr17:17289655..17293959-chr17:17349314..17352438,5	MCF-7	breast:
8	chr17:17291681..17293275-chr17:17315308..17316852,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28386962	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615897	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28694472	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502590	1.00[ASN][1000 genomes]
rs7216428	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216582	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222345	1.00[ASN][1000 genomes]
rs73286451	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286465	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286467	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8068177	0.82[EUR][1000 genomes]
rs8069248	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8069439	0.96[EUR][1000 genomes]
rs8070596	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891303	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17287600-17292600	Enhancers	Fetal Muscle Trunk	muscle
2	chr17:17289800-17293400	Weak transcription	Dnd41	blood
3	chr17:17291200-17292600	Enhancers	Adipose Nuclei	Adipose
4	chr17:17291400-17292800	Weak transcription	Gastric	stomach
5	chr17:17291800-17294400	Weak transcription	GM12878-XiMat	blood
6	chr17:17291800-17294800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:17291800-17295200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr17:17292200-17292800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr17:17292400-17292600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr17:17292400-17292800	Enhancers	Osteobl	bone
11	chr17:17292400-17295200	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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