Variant report

Variant	rs73286465
Chromosome Location	chr17:17298616-17298617
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17298469..17300078-chr17:17302432..17304421,2	K562	blood:
2	chr17:17297235..17298837-chr17:17306470..17308847,2	K562	blood:
3	chr17:17295061..17298024-chr17:17298528..17300669,2	K562	blood:
4	chr17:17296607..17299320-chr17:17351400..17353200,2	MCF-7	breast:
5	chr17:17293831..17296561-chr17:17298528..17300102,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28386962	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615897	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28694472	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502590	1.00[ASN][1000 genomes]
rs7216428	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216582	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222345	1.00[ASN][1000 genomes]
rs7223785	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286451	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286467	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8069248	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8069439	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8070596	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891303	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17295800-17299400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:17296000-17304600	Weak transcription	Gastric	stomach
3	chr17:17296200-17299600	Weak transcription	Thymus	Thymus
4	chr17:17296200-17301400	Weak transcription	Primary T cells from cord blood	blood
5	chr17:17296200-17301400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr17:17296200-17301400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr17:17296400-17305600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr17:17296600-17299800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr17:17296600-17301600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr17:17296600-17301800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:17296600-17305600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr17:17296600-17305800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr17:17296600-17306200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr17:17297000-17299600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr17:17297000-17301400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr17:17297200-17306600	Enhancers	Dnd41	blood
17	chr17:17297400-17300200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr17:17297600-17299400	Weak transcription	Spleen	Spleen
19	chr17:17297800-17298800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr17:17298000-17298800	Enhancers	Adipose Nuclei	Adipose
21	chr17:17298600-17298800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr17:17298600-17298800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr17:17298600-17306800	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links