Variant report

Variant	rs9891303
Chromosome Location	chr17:17295454-17295455
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17295061..17298024-chr17:17298528..17300669,2	K562	blood:
2	chr17:17293918..17295696-chr17:17303965..17305764,2	K562	blood:
3	chr17:17293831..17296561-chr17:17298528..17300102,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28386962	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615897	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28694472	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502590	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216428	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216582	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222345	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7223785	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286451	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286465	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286467	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8069248	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8069439	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8070596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17292600-17296400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr17:17292600-17298000	Weak transcription	Adipose Nuclei	Adipose
3	chr17:17294400-17296600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr17:17294400-17297200	Flanking Active TSS	Dnd41	blood
5	chr17:17295000-17295800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:17295000-17295800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
7	chr17:17295000-17295800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr17:17295000-17296000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
9	chr17:17295000-17296000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr17:17295000-17296000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
11	chr17:17295000-17296000	Flanking Active TSS	Thymus	Thymus
12	chr17:17295000-17296200	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr17:17295000-17296200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
14	chr17:17295000-17296600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr17:17295000-17296600	Enhancers	Primary hematopoietic stem cells	blood
16	chr17:17295200-17295600	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr17:17295200-17295600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr17:17295200-17295800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr17:17295200-17295800	Flanking Active TSS	Primary B cells from peripheral blood	blood
20	chr17:17295200-17295800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr17:17295200-17295800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr17:17295200-17295800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr17:17295200-17295800	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr17:17295200-17295800	Flanking Active TSS	GM12878-XiMat	blood
25	chr17:17295200-17296000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr17:17295200-17296000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr17:17295200-17296000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr17:17295200-17296000	Flanking Active TSS	Fetal Thymus	thymus
29	chr17:17295200-17296200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
30	chr17:17295200-17296400	Enhancers	Fetal Muscle Leg	muscle
31	chr17:17295400-17295600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
32	chr17:17295400-17295600	Flanking Active TSS	Duodenum Mucosa	Duodenum
33	chr17:17295400-17296400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr17:17295400-17296400	Weak transcription	Spleen	Spleen

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