Variant report

Variant	rs28386962
Chromosome Location	chr17:17296922-17296923
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17295061..17298024-chr17:17298528..17300669,2	K562	blood:
2	chr17:17296607..17299320-chr17:17351400..17353200,2	MCF-7	breast:
3	chr17:17295804..17297942-chr17:17300007..17301884,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28615897	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28694472	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502590	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216428	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216582	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222345	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7223785	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286451	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286465	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286467	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8069248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8069439	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8070596	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891303	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17292600-17298000	Weak transcription	Adipose Nuclei	Adipose
2	chr17:17294400-17297200	Flanking Active TSS	Dnd41	blood
3	chr17:17295600-17297400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr17:17295800-17297000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr17:17295800-17297200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr17:17295800-17299400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr17:17296000-17297000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr17:17296000-17297400	Enhancers	Fetal Thymus	thymus
9	chr17:17296000-17304600	Weak transcription	Gastric	stomach
10	chr17:17296200-17299600	Weak transcription	Thymus	Thymus
11	chr17:17296200-17301400	Weak transcription	Primary T cells from cord blood	blood
12	chr17:17296200-17301400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr17:17296200-17301400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr17:17296400-17297400	Weak transcription	Fetal Muscle Leg	muscle
15	chr17:17296400-17297600	Active TSS	Spleen	Spleen
16	chr17:17296400-17305600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr17:17296600-17299800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr17:17296600-17301600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr17:17296600-17301800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr17:17296600-17305600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr17:17296600-17305800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr17:17296600-17306200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links