Variant report

Variant	rs28694472
Chromosome Location	chr17:17293526-17293527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28386962	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615897	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502590	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216428	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216582	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222345	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7223785	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286451	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286465	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286467	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8069248	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8069439	0.96[EUR][1000 genomes]
rs8070596	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891303	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17291800-17294400	Weak transcription	GM12878-XiMat	blood
2	chr17:17291800-17294800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr17:17291800-17295200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:17292400-17295200	Weak transcription	Fetal Muscle Leg	muscle
5	chr17:17292600-17295000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr17:17292600-17296400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr17:17292600-17298000	Weak transcription	Adipose Nuclei	Adipose
8	chr17:17293400-17294400	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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