Variant report

Variant	rs8073015
Chromosome Location	chr17:66661001-66661002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2191143	1.00[AMR][1000 genomes]
rs61640869	1.00[AMR][1000 genomes]
rs7218728	1.00[AMR][1000 genomes]
rs73353024	1.00[AMR][1000 genomes]
rs73353027	1.00[AMR][1000 genomes]
rs73355244	1.00[AMR][1000 genomes]
rs73355247	1.00[AMR][1000 genomes]
rs73355249	1.00[AMR][1000 genomes]
rs73355254	1.00[AMR][1000 genomes]
rs73355255	1.00[AMR][1000 genomes]
rs73355256	1.00[AMR][1000 genomes]
rs73355257	1.00[AMR][1000 genomes]
rs8064440	1.00[MEX][hapmap]
rs8069435	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9914332	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833524	chr17:66524030-66705194	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66656000-66661600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr17:66658200-66661200	Weak transcription	Fetal Brain Male	brain
3	chr17:66661000-66661400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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