Variant report
| Variant | rs8128685 |
|---|---|
| Chromosome Location | chr21:16187005-16187006 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:16182601..16185145-chr21:16186728..16189405,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs1997579 | 0.86[GIH][hapmap] |
| rs2403837 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap] |
| rs2822933 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs2822940 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2822946 | 0.86[GIH][hapmap] |
| rs7276875 | 1.00[CEU][hapmap];0.82[YRI][hapmap] |
| rs7280544 | 1.00[CEU][hapmap] |
| rs8131603 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap] |
| rs9977885 | 0.86[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap] |
| rs9981655 | 0.86[GIH][hapmap] |
| rs9984950 | 1.00[CEU][hapmap];0.95[GIH][hapmap];0.81[LWK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869911 | chr21:16184645-16210579 | Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
