Variant report

Variant	rs2822946
Chromosome Location	chr21:16192445-16192446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1120220	0.92[CEU][hapmap]
rs1569337	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1997579	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2250987	0.92[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2403837	0.86[GIH][hapmap]
rs2776032	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2822938	0.92[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2822947	0.92[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2822952	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4817413	0.91[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4817421	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8128685	0.86[GIH][hapmap]
rs8131603	0.86[GIH][hapmap]
rs9977885	0.86[CEU][hapmap];0.86[GIH][hapmap]
rs9981655	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9984950	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869911	chr21:16184645-16210579	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16191600-16193200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr21:16191800-16193200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr21:16192400-16193000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr21:16192400-16193000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr21:16192400-16193600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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