Variant report

Variant	rs4817413
Chromosome Location	chr21:16201686-16201687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1120220	1.00[CEU][hapmap]
rs12481742	0.84[CEU][hapmap]
rs1569337	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1882875	0.85[CEU][hapmap]
rs1997578	0.83[CEU][hapmap]
rs1997579	1.00[CEU][hapmap]
rs2250987	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2776032	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2822932	0.85[CEU][hapmap]
rs2822938	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2822946	0.91[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2822947	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2822952	0.92[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4817412	0.81[CEU][hapmap]
rs4817421	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7276875	0.85[CEU][hapmap]
rs9305456	0.85[CEU][hapmap]
rs9981655	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869911	chr21:16184645-16210579	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16199200-16204600	Weak transcription	K562	blood
2	chr21:16201000-16202000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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