Variant report
| Variant | rs2822938 |
|---|---|
| Chromosome Location | chr21:16184631-16184632 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:16182601..16185145-chr21:16186728..16189405,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-AF127577.1-9 | chr21:16184519-16184874 | l_2171_chr21:16183738-16189246_brain |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1120220 | 1.00[CEU][hapmap] |
| rs12481742 | 0.85[CEU][hapmap] |
| rs1569337 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1882875 | 0.86[CEU][hapmap] |
| rs1997578 | 0.85[CEU][hapmap] |
| rs1997579 | 1.00[CEU][hapmap] |
| rs2250987 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2776032 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2822932 | 0.86[CEU][hapmap] |
| rs2822933 | 0.81[CEU][hapmap] |
| rs2822940 | 0.81[CEU][hapmap] |
| rs2822946 | 0.92[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2822947 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2822952 | 0.93[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4817413 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4817421 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7276875 | 0.87[CEU][hapmap] |
| rs7280544 | 0.81[CEU][hapmap] |
| rs9305456 | 0.86[CEU][hapmap] |
| rs9981655 | 1.00[CEU][hapmap] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
