Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16191874..16193989-chr21:16194456..16197397,3	K562	blood:
2	chr21:16192306..16193989-chr21:16194456..16197345,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NRIP1-1	chr21:16191164-16196736	ENSG00000235609.4

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1120220	1.00[CEU][hapmap]
rs12481742	0.85[CEU][hapmap]
rs1569337	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1882875	0.86[CEU][hapmap]
rs1997578	0.85[CEU][hapmap]
rs1997579	1.00[CEU][hapmap]
rs2250987	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2776032	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2822932	0.86[CEU][hapmap]
rs2822933	0.81[CEU][hapmap]
rs2822938	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2822940	0.81[CEU][hapmap]
rs2822946	0.92[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2822952	0.93[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4817413	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4817421	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7276875	0.87[CEU][hapmap]
rs7280544	0.81[CEU][hapmap]
rs9305456	0.86[CEU][hapmap]
rs9981655	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869911	chr21:16184645-16210579	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16191600-16193200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr21:16191800-16193200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr21:16192400-16193000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr21:16192400-16193000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr21:16192400-16193600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr21:16192600-16193200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr21:16192600-16193200	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search: