Variant report

Variant	rs4817421
Chromosome Location	chr21:16209554-16209555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1569337	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2250987	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2776032	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2822938	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2822946	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2822947	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2822952	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4817413	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869911	chr21:16184645-16210579	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16209000-16210000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr21:16209000-16210200	Enhancers	Osteobl	bone
3	chr21:16209000-16213400	Weak transcription	Pancreas	Pancrea
4	chr21:16209200-16209800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr21:16209200-16210400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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