Variant report

Variant	rs822758
Chromosome Location	chr3:22973063-22973064
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1671868	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1671884	0.90[EUR][1000 genomes]
rs1683043	0.83[EUR][1000 genomes]
rs1683074	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1708146	0.90[EUR][1000 genomes]
rs3914284	0.89[EUR][1000 genomes]
rs4858467	0.84[EUR][1000 genomes]
rs62252313	0.88[EUR][1000 genomes]
rs696492	0.87[EUR][1000 genomes]
rs696501	0.86[EUR][1000 genomes]
rs696502	0.90[EUR][1000 genomes]
rs696503	0.88[EUR][1000 genomes]
rs696504	0.87[EUR][1000 genomes]
rs696508	0.88[EUR][1000 genomes]
rs696509	0.90[EUR][1000 genomes]
rs698224	0.86[EUR][1000 genomes]
rs698228	0.87[EUR][1000 genomes]
rs698232	0.89[EUR][1000 genomes]
rs711698	0.86[EUR][1000 genomes]
rs711699	0.87[EUR][1000 genomes]
rs711704	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs711707	0.86[EUR][1000 genomes]
rs711708	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs711709	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs822754	0.88[EUR][1000 genomes]
rs822756	0.86[EUR][1000 genomes]
rs822757	0.86[EUR][1000 genomes]
rs822779	0.84[EUR][1000 genomes]
rs822781	0.84[EUR][1000 genomes]
rs822783	0.84[EUR][1000 genomes]
rs822784	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs822785	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs822786	0.84[EUR][1000 genomes]
rs822787	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs822788	0.84[EUR][1000 genomes]
rs822789	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs822791	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22970200-22976600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:22970400-22975000	Weak transcription	Fetal Lung	lung
3	chr3:22970600-22976400	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:22971000-22976200	Weak transcription	Fetal Stomach	stomach
5	chr3:22971000-22978400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:22971000-22978800	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:22971200-22979000	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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